Array 1 1356076-1356825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049150.1 Cronobacter sakazakii strain C757 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1356076 28 100.0 32 ............................ GCTCCCGTCTTTCACGTTGAGGCGTTTCCCCA 1356136 28 100.0 32 ............................ GTCCATCACCATCACGTTGACTGCGCCGCTGG 1356196 28 100.0 32 ............................ GGATCGCCCGGCCCAGCCCCCTCCCTGCAAAG 1356256 28 100.0 33 ............................ GCAAGGCCGCTAAAAATTTCGGCGGCTCTGTTA 1356317 28 100.0 32 ............................ AATGAAACCATAGACGGTAAAGAGCATATTGT 1356377 28 100.0 32 ............................ CTGAAAGTTGACAACGCTTACCTGATGTATAT 1356437 28 100.0 32 ............................ TGGCACAAACGACTATGGCGCAGCGTGGGAGA 1356497 28 100.0 32 ............................ GTCGTGCTCAGGGTGGGTGTGAGCGGCACCGG 1356557 28 100.0 32 ............................ GCACTGCTGCGCTGAAACGCGACCGCGGATTG 1356617 28 100.0 32 ............................ GCGCGAGAGGAACAGTTCCCACGGCGCAGCCG 1356677 28 100.0 32 ............................ TCCCAGTCGTCGTTAACAATCGCGTAGTGGAA 1356737 28 100.0 32 ............................ GCCTGCGCCTGGAGCGCGGTAAACGTCTGCCG 1356797 28 85.7 0 ......................C.T.TC | T [1356817] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGTGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : CCAATTCCCTCGCCGCCAGACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCTGGCGGGCAAAACCACATTTGCCGGTAAAAATGTCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGTGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGACCTGCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1677162-1678715 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049150.1 Cronobacter sakazakii strain C757 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1677162 29 100.0 32 ............................. GTAAACGGCGTTGCGCCGTCCGTCGTTGCCGA 1677223 29 100.0 32 ............................. TGATGTAGCTCACCTGGCGTTCCCCACTCTCC 1677284 29 100.0 32 ............................. CCGGTACGGTTAGTGGCACCAGGCTTGGCGTG 1677345 29 100.0 32 ............................. CGTCGCTGACGGCGCGGTACGTGATTACCTGT 1677406 29 100.0 32 ............................. TGGCGGGTGGCGCGGGTTTAATCGGATTAGGG 1677467 29 100.0 32 ............................. CCGGATTCCATATCGGCGGCGGGCATAGGTGA 1677528 29 100.0 32 ............................. TTTCCCCAGCTGCTCCCGCAGCACCTTACAGG 1677589 29 100.0 32 ............................. CGTGCTGCCGAGGTTGAGCGCCAGAACCAGGG 1677650 29 100.0 32 ............................. TTACAGTTAAGCGAAGAGGTAAGAGCGGCGAA 1677711 29 100.0 32 ............................. GGTAAGCCTACTGACGGCAAAACCGACGCCGA 1677772 29 100.0 32 ............................. CGTCGGTGGCGGGGGTTTCATTCAGTACGCGG 1677833 29 96.6 32 .C........................... AGATTTACGAAATAGACCCGATTCAGTGCATC 1677894 29 100.0 32 ............................. CGCTTAGCAACCCTAACGCTTATGCATTCCTC 1677955 29 100.0 32 ............................. TCACTTCGGAAAGCGGCGACAGCAAATAAGCA 1678016 29 96.6 32 ..T.......................... CGCACGCTTCCGTTTTCGCCGCGAGAGTGTAA 1678077 29 100.0 33 ............................. GCTAGCGCGTTGAATGTGACGGTAGTTTTTCGC 1678139 29 100.0 32 ............................. CCGCTGACCAGGTCATTACAGCGCTTGCTGGT 1678200 29 100.0 32 ............................. TAGACCCTCGCACGGTTCGTCATTATCTCTCA 1678261 29 100.0 32 ............................. AGCATCTTTTAAAGAGGTCTTTATGGGCCACA 1678322 29 100.0 32 ............................. ATTTGGTTCGGCCTGAACGATATACCGGTGAG 1678383 29 100.0 32 ............................. CCTCTAATACACAGGAGTTGCCACCCGGCGAG 1678444 29 100.0 32 ............................. AGTGTCTACATTTAATGATGTCAGTTTGTGTT 1678505 29 96.6 32 .C........................... TCTTCCGGCGCGTCGGCCAGCTCCACCTGCTC 1678566 29 93.1 32 .C.........A................. ATAACGGCCAACTTTACATTTAAAAATGATGG 1678627 29 93.1 32 .C.........................T. AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 1678688 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGCGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCTCAGGCTCTTAGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACAATCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1704933-1706731 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049150.1 Cronobacter sakazakii strain C757 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1704933 29 100.0 32 ............................. CGCCACTAACGCCGTTTTGGCATCCGGTGCAA 1704994 29 100.0 32 ............................. TTTATCGTTCGGGCGGTAGATCCCTGCGTTTG 1705055 29 100.0 32 ............................. CCCCTTCTGCACGGCAACGACAGGAATCACGC 1705116 29 100.0 32 ............................. CGCGTCGGTATCACTGTCGATACCGAGTTTGG 1705177 29 100.0 32 ............................. GTCGCGCAAAGCGCCATGCGGCCTGCGCCCGG 1705238 29 100.0 32 ............................. CCCGCAGCAGACAGAGCCTTTGTCACCGCATC 1705299 29 96.6 32 ..A.......................... CCTACCGACTCCGAGAGAACGCGTACACAACC 1705360 29 96.6 32 ..A.......................... GAAAATGTGTTTAACGCAGTGAAAATGATGGA 1705421 29 96.6 32 ..A.......................... GGATTGCACGGGCAGTACTAATTACGTTGGAA 1705482 29 96.6 32 ..A.......................... CGCAGCGTGTTATCACCAACAGAGGTGTTTCT 1705543 29 100.0 32 ............................. CGGCACCACCTTGACGCAGCTGGGCTGCGAAC 1705604 29 100.0 32 ............................. CGGCAGAGGGAGGGGTTTTCGGTGATATTTCT 1705665 29 100.0 32 ............................. ATCACTTTCGCTTTACACGTGGTGACGATCCG 1705726 29 96.6 32 .A........................... CGGTGCCTGAGCAACTCGATCGCAATATTATC 1705787 29 100.0 32 ............................. TTTATTTCGTGCCAGGTAGCGTGTGTGAACTC 1705848 29 100.0 32 ............................. TATGGCGCTGGCGGTTCCCGGTGCAAACGCCT 1705909 29 96.6 32 ............T................ ACTACGGGTCGGACGTTGTCGTTACTTACCCC 1705970 29 96.6 32 ............T................ AAGGGTGGCGAACGTGCGTGAAGGGATTTCGA 1706031 29 96.6 32 .....T....................... GTTCTTTAACGCTCTGGTGACGCTTACCGTAT 1706092 29 100.0 32 ............................. ATTACAACCAGATCCCCGGCACTACGCAGACA 1706153 29 100.0 32 ............................. GATAACCGTAGCCAACAGGCCGTAGAAGAGGA 1706214 29 100.0 32 ............................. CTATTAACGATCCCGACGTTCGCGGCGTGCTG 1706275 29 100.0 32 ............................. TGGACGGGGGTTAAGCGCGGAACAGCTGAATT 1706336 29 100.0 32 ............................. ATCCCTCGCGGCGTTTTAAACTTGAGCAGCTC 1706397 29 100.0 32 ............................. GGAAGTAAACCATGCCCTACGCCACACCAGAC 1706458 29 96.6 32 ............A................ ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 1706519 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 1706581 29 100.0 32 ............................. CCGCCTGCGTCCTGACCGGCCTGTAGGCTTTT 1706642 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 1706703 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.5 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCAGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATAGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCAGCCTTTAAACTTTACAGGCATTATTGAACATGAATAAAACCATTTGCACCTTACTTATTACTGCCGCGTTGTGTAGTACTACCGCTGTTGCCAGTGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGCACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //