Array 1 265425-266977 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSV01000002.1 Salmonella enterica subsp. enterica serovar Cerro strain 45 NODE_2_length_447250_cov_21.3459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 265425 29 100.0 32 ............................. TTTAAATTAATCGCAAAGACAGTTTTACTAAT 265486 29 100.0 32 ............................. CTGTCGGGGATTAGCTCCCAGGCGTAGGCGCA 265547 29 96.6 32 ............................C CCGGCTACGTGCCGGTAATAGATTGGGACTCC 265608 29 100.0 32 ............................. GTGCAGTTGTTGTCGTGAAGATGGAGCGCGGT 265669 29 100.0 32 ............................. GATGCAGTCGCCAACGGCGGGACGCTATACGT 265730 29 100.0 32 ............................. ATACCGCCTCTTACATTGGCGCCGTATCAAAA 265791 29 100.0 32 ............................. CCGGGTGCACGCTTTTATTTTTTATGGTCGCC 265852 29 100.0 32 ............................. GGAACAGGCCGTGCTGTATCCGGCGGTCGACA 265913 29 100.0 32 ............................. GAATTGCTCGCGCATGTCCGGCAAAAATCCAG 265974 29 100.0 32 ............................. GCGTGCCACGCAGGGGATCTATCAGTTCGACC 266035 29 100.0 32 ............................. GTAAACCGTGTGCTGACAGGTCATAAACTCAC 266096 29 100.0 32 ............................. TCAGCTACTTGAGCAGGCAAGTGAACGAGTTA 266157 29 100.0 32 ............................. CCACTGCAAACGGACCCGTATACGAGGGCGGT 266218 29 100.0 32 ............................. ATAACAGCAGCCACAATATAAACAATGGTTAA 266279 29 100.0 32 ............................. ATCCCTTCTTAGTTCTTATTCCGGAGCGTCAC 266340 29 100.0 32 ............................. AAAATAAACAGGAATCGTGGGCTGAATCCGGC 266401 29 100.0 32 ............................. TATTTTTTTTCAACTGGCTAAATTTTGTTGTC 266462 29 100.0 32 ............................. GAAATCGGCTATCTTTGTGCTGCCCGTATCGG 266523 29 96.6 32 ............................T AACGTCGTGGTCGTCAAAGTCGGTTTCCTCGA 266584 29 100.0 32 ............................. GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 266645 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 266706 29 100.0 32 ............................. ATTAAACGCCCCATCACCATTAGGCTTGGGGT 266767 29 100.0 32 ............................. GTAAACCGTGTGCTGACAGGTCATAAACTCAC 266828 29 100.0 32 ............................. GTTACGCAGCCATTGAGGTGCAAACGGATCAA 266889 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 266950 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCACTACTAATCTTACAGACGGCGTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGCGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCTATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 283224-284352 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSV01000002.1 Salmonella enterica subsp. enterica serovar Cerro strain 45 NODE_2_length_447250_cov_21.3459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 283224 29 100.0 32 ............................. CCGGTCAGCACACCGGGTGTGCTGGTTTACGA 283285 29 100.0 32 ............................. CGTTTAAAGACGGCCTGGCAAACAGCAATTTC 283346 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 283407 29 100.0 32 ............................. CCAGATAGCGGTCTTTTCTGAATCTGGCGTAT 283468 29 100.0 33 ............................. AAACCGAACGATTTACCCAAATGCCCCACCTGC 283530 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 283591 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 283652 29 100.0 32 ............................. CCGCCTGGCACTGGCTATAGGAATTAAACCGT 283713 29 100.0 32 ............................. CGCAGCTATCCCCCATCATAGAACGCTAATCC 283774 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 283835 29 100.0 32 ............................. GGTGAATCTTTCCAGCGTCGCCCTCAGCACGC 283896 29 100.0 32 ............................. CGTAACGCTTTCGAAAATAACCCGCAGCGCCC 283957 29 100.0 32 ............................. GCATCCCTTTACACGCCGTATTCTCATAGCAG 284018 29 100.0 32 ............................. GCATTGCTGCAATCACCTCAACCGGCGATCCA 284079 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 284140 29 100.0 32 ............................. CGGGCAAATGCCCGCTTTCTTGTTTCTATCAG 284201 29 100.0 32 ............................. CCAAAACTGAAATGACCAGTTACGTTGATCAT 284262 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 284323 29 96.6 0 ........T.................... | A [284350] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //