Array 1 391645-392048 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134535.1 Arachnia propionica strain NCTC11666 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 391645 37 86.5 35 A....A..C............TA.............. GCCTCTCGAATCAAAATACCATTGATCATAATGTG 391717 37 100.0 33 ..................................... ACGGGGAGCTCTCCGTTGTTAGAGCCTTTCGGC 391787 37 100.0 42 ..................................... TTGTTGCAATATTCACACCCCGGGCATCCGGAGTGCCTGAAA 391866 37 97.3 39 .........T........................... ACGCGTTAGTTTCGCATGATGATCTGGGCATGGTGGACG 391942 37 91.9 33 ..............T......TA.............. TACTCCACCCGGGTGTTCCCCCCGATGACGTCG 392012 37 81.1 0 .....A..C............TA...........CGT | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 92.8 37 GTCTGGAAGCACCGCGAACCTCGAAGCGGATTGAAAC # Left flank : GTGGCGAATGGTTCATGAAGTTGGTTGAGCCGGGCCGCGACGAAGGAGCAGCCCGTGTCGAAACCACTCTTCCTGAAGCAGATCGGTCCAGCCCGTGATTAAGGTTCCTCAAAGCTGGTTGAGCCAGCTCGTGGTGAAAGTTTTTGAAGCTGGTTGAGCCAGCTTGTGAGCGCTAGCGAACGGCTGTGTCGAAACCACTACCGGCGGCCGAACAGCAAACCCGACCGCGCCCTGGGCCGGATCCCGCGCCTCGGGACGGGACCCGGCCCGAGGTAGACTCCGACGAAGACGCCCGGCTCCCCGCGACCAGGCATCTTGGAGACACCCTCAGACAGGGGTGTTGGAGAACAACCAAAAACAGCCTCAGATGTGTATGGCACTTGACTAGGGGTTTTACCCCTCTGAGGGCAGGTTCTGTCCGCTTGTTGGAGGGGGTGAGGAGGGGTGGTGTGTAAAACCGCCGCAACAGGGCTTGTCAGGACGGCGTGCCAGGGGGTAGG # Right flank : TATCAGTTTGAGGTGCATTCGGCGAGCTGCTCCGGTGAGGAATTGTCGAGAACCTCATCTGACTGGTTTCTTCGTGCTTGAACTCCTCTCGCGCAGAGCGAGTTGGGGATCTCGTACATGACGTGGAGGGGAAGTGATGACTACTGACAACCTTCTTCTCGATGAGGAGAAAGTGGTGGAGTGTTTCACCCTGCCCGCGCTTCGTTGCGCCTGGGAGAGAGTGTTGAAGAAGGACGCCCAGGACGGCGACATCTCCGATTCGGTGGAGCGGTTCGCCGAGGGGGTTCAGGAAAGACTGGAGGAGCTCGCCGAGGAGCTCCGGGCGGGGACGTTCCGGCCCTCGGACCTGACCCGGGTGGTGATCCCGAAGAAGAACGGGGAACGTTTCCTCGACATCCCCTCGGTGCGGGATCGGATAGTGGAAAGGGCGATCCTGGAACACATCAACCCGGCCATCGACCCGCTCCTCGGGGCAACCGCGTTCGGTTACCGCCCCGGAC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGAAGCACCGCGAACCTCGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA // Array 2 394327-394796 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134535.1 Arachnia propionica strain NCTC11666 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 394327 37 100.0 35 ..................................... TTGATCAACTCCTGGCAGTCCTTGCTTACTCTCTC 394399 37 100.0 36 ..................................... CGAAGGCGCAGCTGCTTCAGGTAGCGCTTCTTGACA 394472 37 100.0 36 ..................................... GTTTCTGCCCTCGTCCGGGTACGCGTAACAAGCTGG 394545 37 100.0 37 ..................................... AGGAGCGATATTTCTCAAACGCCCCCCTTAGCACCGT 394619 37 100.0 34 ..................................... GGCGTCCTGATCGTCTTGGCACGCTATCTCAGCA 394690 37 100.0 32 ..................................... TCGCCTCGTTCATGGATTCGATCACGCTCTCC 394759 37 94.6 0 ...................................TG | T [394789] ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 99.2 35 GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC # Left flank : GGCCTACGGGGACCGCATCCAGTACTCCGTGTTCCTGCTCGGCATCACCCCGGAGGAGCTGGTGGAGATCCAGAGCCGGGCAGCCGGCATCATCGACGAGAACACGGACTCGCTGTGGATCGTGAGACAGTGCGCGGCCTGCTGGGAGGAAGCCCGAACCCTGGGTCAGGCCCATCCACCGGCCCGGGTGCTGCACTACACGGTGATGTGAAGAATCCTGCCGGATCCGCCGACGCCTGACAGGACGGGCCAGGAGGTGGCACGGGGGTAGGGTTGAAAGAAGCCGGCAATCCCGGCTGCCCGCAGCCGGGGGTTTTGGAGACACCCTCGGACCGGGGTGTTGGAGAACGACCAAAAACAGCCTCAGGTGTGTATGCCACTTGACTAGGGGTTTTACCCCATTTAGGACAGGTTCTGTCCGCTGGTTGGAGGGGGTGAGGAGGGGGGGTGTGTAAAAACGCCGTAACAGGGCTTGTCAGGACAGCGTACCAAGGGGTAGG # Right flank : GGGAATGGGTGCCAATGGCGGTGTTCGCGCTGTCATTGGCGTCTTCCGCAACTGGGGTTGTTGAATCGGTTTGTGGGTTTGGCTGGGTGGGGTGCGTCGAAATCGACTTGTGGAATGTTGGGTGTGCAGTCGGGTCCGTTGGTCGGGTGTGATTGGGTGTTTTTGCTTTGGATTGCACCCGGGTGCTTTGGGCGCAATTCTGTAATTTGCCCGCTGGCTCGTCGGTGACGGGGGAAGGGCGTGGGGCGGCCGTGACATCGCGACGGGGCGGGGTGTGCAGGGCCCGGGCTGTGCGTCGCTCGGGCGGACATTCGTGGGAGCAGGCCCCCGTCGCCCGGCGGTGGTGGTGCGTCGCCACGAGGGCGTTTCCGCGGTTTGTGTAAGTGGTTAGATAACGAAAGTTAGGGTGCGTGGGTCGGGATTTGTCATCCGATTGGCTGGCGTTTCGCGGAAACTGACAGCGTCCAGTGCCCGTAGGGCGCGGAAAATCGTGGTCTTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAACCACCGCGAACCTCAAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 668484-670559 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134535.1 Arachnia propionica strain NCTC11666 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 668484 36 75.0 36 .AA.T.T.A..A.....T.......A.........T CGCGACCCATAGTTTCGTGCCGTACCCCGCTTATTT G [668488] 668557 36 97.2 37 ......T............................. GGGATGGTACTGCCACAATGGGAACACCAATCGAAGC 668630 36 100.0 35 .................................... GCCAAGGTCGACTCGGTGTTCCGCGGAATCGACGG 668701 36 100.0 37 .................................... GTGTTCACAAATGGGAAGAACAACTACCCCAGAATGG 668774 36 100.0 36 .................................... GCGGCAGCGGATGCGGCTGCACCGACCGCAGAAGCG 668846 36 100.0 37 .................................... CCCGGTGCCGGAGTACCGGGCGGGCTCCCAGCCGAGG 668919 36 100.0 38 .................................... CCGGCGATCTTCCCACCCAGGCCCTTGATGCCGGAGGA 668993 36 97.2 36 ...........A........................ GAGGCGTTTTGCCTTCGCGCCGGCTGCGGCGAGGTC 669065 36 97.2 36 .......................G............ CTTCAGCGCGTTTTTGCCGTTGTAGTAGTTACGGCG 669137 36 100.0 38 .................................... CATCAGGCCACGACCAAGGTTTTGTTGACCACACACTC 669211 36 100.0 38 .................................... CCGTCTCGGCCGTCGAGGCCTTCGCCTTCGGGGTGCCG 669285 36 100.0 37 .................................... TCCCCAGTCCGTCTCCACAAGGACGTATGCGCATGCC 669358 36 100.0 39 .................................... AATGTTCCCGGCTTGGTCGTCTTGGTTGGGGTCGAGGAG 669433 36 100.0 39 .................................... TAAAACTCGGCCTTACGCGCACCAACGGAAAGCCTTGAG 669508 36 100.0 36 .................................... AGAGACGGCAGAATCCCTGCGGCGAGTGGGAGTATG 669580 36 100.0 35 .................................... TACAGGCCGGAGAGGTCTTTGGCGTAGGCGCGCCG 669651 36 100.0 37 .................................... GCACGATCGCTCCGGGCACTTCGGTGGCGATAGCCCC 669724 36 100.0 35 .................................... GCCCGGGCGGCAGAACTGATCGGCACCACCGCCAA 669795 36 100.0 37 .................................... AACTCGCCGACTCAATCGGCGAAACCTGGGACAAGAT 669868 36 97.2 35 .............T...................... TATCAGGCTCTCAATCCCGATAAGACGGTTGCGTC 669939 36 100.0 38 .................................... TCAGAACTCAGGCAGTCGGATCCGGCCCCGAACAGGAG 670013 36 97.2 36 .........T.......................... CTTCACCGCCTCCAGGGCGGCGTTACGGCGGTTCGT 670085 36 97.2 38 .......................G............ TCCGCCCGCACCGCCACCGGAGAACGCTCCTCCGGCCG 670159 36 100.0 37 .................................... CGGCGGAGATCAACGCGGCCGCGGTCTGCTGCCAGCC 670232 36 100.0 39 .................................... CCACCAGCACGGGCAGCGGAGCCCCCGCCGAGACCACGG 670307 36 100.0 38 .................................... CATCTCGAAAAGGGTGGGTGTGCTGCCCACCCCGATGG 670381 36 100.0 36 .................................... GTGGGAGGAACCCATCCGGGTTGTCGCAGCGAAGGT 670453 36 100.0 35 .................................... GAGCACACCCCGCATAACGACTTTTCAAATTCGTG 670524 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 29 36 98.6 37 GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG # Left flank : ACTGATCCCATCCAACAACTGACAGCCCCACAGGTCCAGATCTGATTCCAGGAATGGAGGAAGACCAGGCCGGATGCCGGCCATCTTCCTTCCCCCGTCGTCCCGGGGAACGGCAGCGGAAGAGGTCGTGTAGCCCAACGCAGCCTGCAACCAGGGCTGCGATGTGTCGGCCAGCCCAGCCCGATCGCTTTCGGCATGCGATCCGGTGCCGTGGTGGGGCGAGAGACACGGAGGTGTGGCCCCGCCACCGTCGTCATCGTGCGACGCGGGCTCAGCTGTGTATTTTGCTCCGCCGTGACCCGGCGAGATCACCCTGACCGGCGGGTCTTGGTGCTTCCAGGAGCGTTGCGCAGCGCCCCGTCTGCTCATCGAAGTCAGGATGCGATTCTGACGAACCAAGACCGCTTATCAAACAAACATGGCGGCAATTGAGAACGATCAAGATCGACAGGATGGATTCATGATGGAACCTTCAAGAATCTGTGCATGGATGACGTGGG # Right flank : GGGCTCGCGATTTCTTTGGTCTCTGACTACTAGTATTACACGGGTCTGCGAGCGCCGACCAGCTGGGGCGTGCGTGAAGGGTTGTTCGTTCTCCGTAAGTGGAGTGAAACCTGCTCTGACTAGGGTGCGAGCGCTCCCCAGGGGTTTGGTGGGTACCGGAGCGCTCGCGTGGTAGCTAGACAATCTGCGGCCCTCTGGTGGGTAGGTCCTCGTGGTGCCCGACGAAGATGAACCGATCCTCGCCGATCTCGCCCAGGTCCACGATGACCACCGAGTCGACGGCCAAGTTCATGATCTTCTCTCCAGCTGCTCTCAGGTGAATCAGCTCAGACCTGTTGAGGTCTCAGATGAAAACGGAGTACTGGAGGCGTTCTCCATGGGCCTCCATCAGCTTGCAGATTCGCCGCAGTCTTCCGGGTTCACGGATGTCATATGCCACCAGATAGCGCCGCCTCCGTGTCTTCATCTGGTCACCATCGCAGTGTACTGGTCCAGTTCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATGGAGCCTGACCTTTGAGGTCAGGAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 4 2909770-2899971 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134535.1 Arachnia propionica strain NCTC11666 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2909769 36 100.0 37 .................................... GGTTGGTGGATCGGCCGGGCTTGCGTACGCAGACCCC 2909696 36 100.0 37 .................................... TCCGGATATGCGGGCCAGGACCGCCCAGGCCTCCTCC 2909623 36 100.0 36 .................................... GGAATCCGGGATTCCATTGAGATTCTTATCCAAGTG 2909551 36 100.0 36 .................................... TGGCCGGGTAGGTTCCGGAAGAACGTGATGACGTCG 2909479 36 100.0 37 .................................... AATTGGTCCTCAGTCAGAGCACCTTTGGACAGCACAA 2909406 36 100.0 38 .................................... CCCCTTACAGGATATCGGTCTGCTCCATGACGTAATCT 2909332 36 100.0 40 .................................... CGGTTCGGGTTCGGGCTGGATCTCGCGGATGTGGGGGGAT 2909256 36 100.0 39 .................................... CAGGGACTTGTACTCGTGGACGTTGTCGCCGCCCGCGTC 2909181 36 100.0 38 .................................... GCCTGGTCGGGTTCATCGGGCCTGAATCCGGGGATGGC 2909107 36 100.0 38 .................................... GCCTTCCACCAAGGTGGCGGAGGCCTGGATCTTGATTG 2909033 36 100.0 39 .................................... GCTTTCCTCGTCGCCGGCGGTCTCGCCACTGTCGCAAGC 2908958 36 100.0 37 .................................... AAGTGGACGTTGAGCTCGTCCAGCGCCGCTTCGCGGC 2908885 36 100.0 36 .................................... CTATAGGCGACACAAATGTTCGGGATATCGGCGAGG 2908813 36 100.0 38 .................................... GACTTCAAGGTGTGGCGCACCTACATCCCTGACTGCGG 2908739 36 97.2 39 .........................C.......... GACCAGGAAGGAGGTGTGGCCGTTGAGCTTTCGGCTGAG 2908664 36 100.0 40 .................................... TCGCCCTCCGCGGAGGAGTCGACGGCGACGCGGCTGCGAG 2908588 36 100.0 37 .................................... CCAGAAGCCGAGTTGGATGAACTCCAAGAATGGCTTG 2908515 36 100.0 37 .................................... CTCTATGTTTGTTTTCTTCCCCAGCCAGGAATACACT 2908442 36 100.0 38 .................................... GAGCAGGGTCGATGGCTGGGTGGTTCGGTTGTTGCTGG 2908368 36 100.0 40 .................................... ACTGATATACCAATGAATACCAAACCAGATGGTCAGCCTC 2908292 36 100.0 34 .................................... CGATCTCCACCGTTGCTTTCTGCTGCTCCGTCGT 2908222 36 100.0 37 .................................... CAGAGCTTCCAGCAACACACCGTCCTTGTGAACATGC 2908149 36 100.0 38 .................................... TTGATCTTGGCGCTCAATCGAAATCCACCTCCCGTTCG 2908075 36 100.0 37 .................................... ATGAAATCATCGAATTGAACCCACTCATACCTTACAT 2908002 36 100.0 38 .................................... GCTGCTGTCTCGCCAGTGGGCTTCAACTTCGACGTGAG 2907928 36 100.0 37 .................................... ATCGAGACTATGCGCTCGTCAAGTTTACTCATGGGGC 2907855 36 100.0 36 .................................... ATCCACAGTGTCCCAACTGAGGCCATGGCGTTACCA 2907783 36 100.0 37 .................................... AAGTAGATACCTCCATATTTTGCATGAGTCATGGGAT 2907710 36 100.0 38 .................................... TAGTTCGGTGAGGACGGCGTCGGTTTGACGGGTTGATG 2907636 36 100.0 36 .................................... GAAGGCACCCCCGTGGTAGCAGTCATGGATGCAACC 2907564 36 100.0 42 .................................... GTCTCAGGATCCCCAATCTTCACATCACGGTAGACGACGTAT 2907486 36 100.0 36 .................................... AACTCTGGCCCGAAGTTCACGAAAGGCCCCGCGTTC 2907414 36 100.0 37 .................................... CGCTCCGTCGAGTGCAGATCAATGTTCGAACCCTTGG 2907341 36 100.0 37 .................................... ATCTTAAGGAATAGTCATACGCTTTATGAGGAAGGTC 2907268 36 100.0 41 .................................... CTCGAAACTCTGCCCGTCGCTCCGGGCTGTGCGGTATGCGG 2907191 36 100.0 37 .................................... CCAGTACCGCCAGACCCCGCGTGCAATGTCGGCGGGA 2907118 36 100.0 37 .................................... AATTATCTCGTTTACTTCTCCGATACCTTTCTTGACC 2907045 36 100.0 36 .................................... GGGGGCGCGCTCCTTGCCGCCAAGATCCTCGTAATC 2906973 36 100.0 36 .................................... CTTCGCGATCGATTTCGACCGAACCTCGAAGTGGAG 2906901 36 100.0 38 .................................... GGGACTGGTGGGGGTGATGCCGTGGCGGGCGAGGTGAC 2906827 36 100.0 38 .................................... ACTAACCTCGTCGCGGATCCGTCCGATCCTTCGACGGA 2906753 36 100.0 38 .................................... AGAATCCGAAGGGCCTGTATTGGAATTACTTCCTGCAT 2906679 36 100.0 37 .................................... CGTGTTGATCCAACCGTCACAGCGTGCGAAGTCAATG 2906606 36 100.0 37 .................................... GGTCGTCTCGTATGTTTACCGAGATGACGCCGGTGTG 2906533 36 100.0 43 .................................... CCCACGCCGGCATCAACACCATCCCCACCATGACCTGCGACTT 2906454 36 100.0 37 .................................... AGTTCTTCCCGCGTGGAGCCCCGCAGCACTGCCGCGG 2906381 36 100.0 40 .................................... TCGAGTTCGAGGCACGCGCGGCACTGCCAGTAGACGGCCC 2906305 36 100.0 39 .................................... AATTGTCGTTTACTCATGTTTTACCTCACTTTCAGTGGC 2906230 36 100.0 38 .................................... TTCGCAGTACGCCGCGATTACGTGGCCCTGCCAGTCGT 2906156 36 100.0 36 .................................... CTTTTTCGCCAGGGCGGGGCTCTGCTTCGACAGGAA 2906084 36 100.0 37 .................................... TTGTAGGTCAATTCTTGATCTTGACCGATAATCGCAA 2906011 36 100.0 37 .................................... AGGGAGTCGCCCTCCCCGCGCGTCAGGTAGCGGGTTT 2905938 36 100.0 38 .................................... GATTTCATCGAGGCGGAGGTCGAATTCTTTACGAACCT 2905864 36 100.0 37 .................................... AATAGCCTGCTTAGGATCCAGTCCGACGGCTTCGCTG 2905791 36 100.0 38 .................................... GACATCAACTTCCCCACCCACCTCGGCGACAAGTGCCC 2905717 36 100.0 40 .................................... GACATGGGTCTCCCGCACACTTCTTGGTAGGCCCACTCGG 2905641 36 100.0 36 .................................... CACCAGCCTCTTCGCAGCCCGCATCCAGGCCGCCGA 2905569 36 100.0 38 .................................... CAGCTTTACTCGAGCACGATTTAATTTTGTGACTCTCG 2905495 36 100.0 35 .................................... TAGCCGGCCCCAGGAGTAATCCCACAGGGCCAGGC 2905424 36 100.0 37 .................................... CCGGTCTTGTGATATTGATAGGCCCGCCCAAAAACCT 2905351 36 100.0 36 .................................... CGACGCCGACTTCCCGTAGCGCCATTTCGCAGGCGA 2905279 36 100.0 37 .................................... TACATTCCCGGAAGCATCCACATAAGGAACCAGACAA 2905206 36 100.0 40 .................................... GGATCCTCGCCCTTCTTGGCAAGCGTAACAAGACCTTTGG 2905130 36 100.0 38 .................................... CATGACGGCAGGAAGAGCATAAGTGGCCTCCACACGAC 2905056 36 100.0 38 .................................... CGCACTCGGGGTCGTGGACGGCGAACGCGAGCAGCGCG 2904982 36 100.0 35 .................................... GATGCCAATTCCAGCGCGGCGGCCTCGTTGCCCTT 2904911 36 100.0 36 .................................... TTCCTGACCGCAGGGTTGGTCAGCTTCTGAATCTCA 2904839 36 100.0 37 .................................... TGAGCTTCTTTCACCTCGGCAATGGCCTGAGCATTTT 2904766 36 100.0 36 .................................... TTCCTGACCGCAGGGTTGGTCAGCTTCTGAATCTCA 2904694 36 100.0 36 .................................... GCAGGCCTCGAGAGTCTCTCGGATTTCACCGAGGCA 2904622 36 100.0 38 .................................... ATAGAAATGTGCGAATGGCCATAATGACCGTCAGCGCC 2904548 36 100.0 40 .................................... TTTGATGCGGCTTTCAAGATACGTCCGGGTTTGGTAATAG 2904472 36 100.0 36 .................................... TACAAGCGCGGGGGTATTCGTGTGGAGTCCACCGTG 2904400 36 100.0 37 .................................... ATGAGGGGCGAGCCTGGCGGTGGCCTGAGCAAGCCGA 2904327 36 97.2 37 ...............................T.... AGCCCTTTGGGGCCTTCAGAATCAATCAGGTGTTCTG 2904254 36 97.2 37 ...............C.................... GTGGATGGTGTACCGTCAGTTGGTGGATCTGTACTAC 2904181 36 100.0 37 .................................... TTCCTCAGGGCCTCCCGCCCTGATGTCTACTAGTATA 2904108 36 100.0 38 .................................... AATCTTTGTTTCATGAATCAATTCCCGCACTTTGTCAT 2904034 36 100.0 38 .................................... CAGGAGGTTGTCGCGGAGCAACTCGATGAGGAAGTCCT 2903960 36 100.0 35 .................................... CAATACCTCCCCGTGAACCACGATGTCGAGGGTGG 2903889 36 100.0 36 .................................... ATCCACAGCCTCTACATCCTCGGTATCGCCATCATG 2903817 36 100.0 36 .................................... TTCTTCAATGAAGTCCAGATACTTTGCATGGGCAGA 2903745 36 100.0 38 .................................... AGCTTCTTGATTGCGTTGACCATTCCGATAATTGCCGG 2903671 36 100.0 38 .................................... TATCCGACGGGGTCGTATTTGCGGATACGCGATATCAG 2903597 36 100.0 36 .................................... GCTACCGCCATGAAGGCAATAGCTCGGAACACTTTG 2903525 36 100.0 37 .................................... AGAACGTCGTTGAGGCGGCCGCGTGGGAATTGTTCGA 2903452 36 100.0 37 .................................... CCCCAGATGACCCGCCACAGCGCATCACCGTTGTCGA 2903379 36 100.0 36 .................................... AGGGAAACAGGCAACCTCGAAGAACAAGCCGTCATC 2903307 36 100.0 35 .................................... GCCTTTCTGCGCGCTGTTCAAGCGAATTAGCATCC 2903236 36 100.0 35 .................................... CATAGACCAAGTGTCCGCGGAACTCCACAAGCACC 2903165 36 100.0 35 .................................... AACAGCTCGAGGATGAACTTGTCCTCATCGGCCCA 2903094 36 100.0 39 .................................... ACGAAAGCTACTAATGTGGGAGTCTGTGGCCCAGATCGG 2903019 36 100.0 37 .................................... GACGACGGAGCCTGGCCGCCTCAGAGGAAGACCGAAC 2902946 36 100.0 37 .................................... CGCCCTGCTCGCCGCCGCGCCGCTGGGCGCGGTGGCC 2902873 36 100.0 36 .................................... AGCTGCCCGTAGGTGGCGTAGAGGTTGGTGAGCCGC 2902801 36 100.0 36 .................................... TAACAGTAGTTTATGTCCATTGCGGTATTGTTCCAG 2902729 36 94.4 38 ..........T....C.................... ATCTATCTGCGGCGATACCGGGAAGAGCGGATGGCTGC 2902655 36 94.4 39 ..........T....C.................... AAATTAATCAGCTGACCGATGAACAAGTCCGCATGCTAT 2902580 36 91.7 35 ..........T....C.....A.............. CGTTGAATTACGGCCGCCGTTTCAAGCAGGATCCG 2902509 36 94.4 38 ..........T....C.................... CACACACCCCGAACAATGTCGGCCGGTGAAGGTGGCAT 2902435 36 94.4 38 ..........T....C.................... CAGTGTCGGCAGTCGGTTGTCCCCATGAGGGGGTCGGG 2902361 36 94.4 38 ..........T....C.................... ACTTCTTGAGCCAGTACGGCTCGCACAGAATTTCCATG 2902287 36 94.4 35 ..........T....C.................... GTGACGGCAGTGTGGAACAGTGTCCTGAAACCCAT 2902216 36 94.4 38 ..........T....C.................... GTCACCGCGGTAGCAGAGCCCCTCAATGGCGTCCTCTG 2902142 36 94.4 39 ..........T....C.................... CACCGAAGTACGCGTGCACATGATCACGGTGCGCCTCCG 2902067 36 94.4 37 ..........T....C.................... TGACCCTTGACGGTCAATTCAATAGTTTTGAACACTG 2901994 36 94.4 35 ..........T....C.................... AGTGGATTGTACTTCTCGGACAGGTAGACGAGTTT 2901923 36 94.4 39 ..........T....C.................... GATGTCGTCGACACCGTTCACAGCGCACCTTCCGGTGTG 2901848 36 94.4 39 ..........T....C.................... TTTTGAAGATACTTAGGGACCTTGTACGGGTTCCGCATA 2901773 36 94.4 38 ..........T....C.................... ATGCCACACGCACCCCGGGCAGTCCGGGCGGCTGCAGC 2901699 36 94.4 37 ..........T....C.................... ATTGGGGCTGAGCTTGCAGTAGAACGGGAATCTCCTG 2901626 36 91.7 41 ..........T....C.......G............ CTCAAGGTACGGAGAGCGACACCGCTCGGTGGATTGCTGCC 2901549 36 94.4 36 ..........T....C.................... CTCCGTGAGGTCACCAATGTGGAAAACTCGGTAGTG 2901477 36 94.4 37 ..........T....C.................... GGTTACGGTGTTCAGGAATCTGCGAACACCGCGTTGC 2901404 36 94.4 37 ..........T....C.................... AGATTCCCCGTTAGGGTGATGGCGGTCATGCGGCGGC 2901331 36 94.4 38 ..........T....C.................... GACCCGAGTACCGCGATCGCTGCGGCATCCGCGAAGGT 2901257 36 94.4 39 ..........T....C.................... GTTCTTCAAACGAGGGTGCTGGGGGTGCGGTTCGTCCAG 2901182 36 94.4 37 ..........T....C.................... GATACCCCCTCCCAGGGGGCGAAGGCAGTCCTCTCGG 2901109 36 94.4 37 ..........T....C.................... TTGCGGCCCACGCTCACTCCTTCCTGCCGTCATCGCT 2901036 36 94.4 37 ..........T....C.................... ATTCCTTGGGACTGTTCAATTACGATAGACCCCAATT 2900963 36 94.4 39 ..........T....C.................... GAGTTCCCCGTGGATGGGTACCATCCGCTGGCGTACCTG 2900888 36 100.0 37 .................................... GCCAAGGTCTCGACATGAGGCCACGCCTCATCCTCGT 2900815 36 100.0 38 .................................... ATTATTTTTATCCCCTTTTTTCAAAATGAAGGATGTTA 2900741 36 100.0 38 .................................... GACGAGCAGGTCCAGGGGGGTGGTTACTGCCACAGCTG 2900667 36 100.0 38 .................................... CAGATTCGCCAGCATGGTGCGGACATCACTCCCCCTAG 2900593 36 100.0 37 .................................... AAGACGATGCTGCAACACCTCGCGGACCCGTCGAAAG 2900520 36 100.0 36 .................................... TCTTTGATGGCCCGCCTGTTCTCCTCCGCGAGCTCG 2900448 36 100.0 38 .................................... GACCCTTGGGGTTTCGGCAGGCCAGCGACATGGAATTG 2900374 36 100.0 36 .................................... TCGCGGATCGCGCGAAGCCCATTCACCACTAGCCCG 2900302 36 100.0 38 .................................... CACCTGGTCGCTTAACTGGCTTCGGCTTCGGTTTGTGC 2900228 36 97.2 37 .......T............................ ACGAAGGGTTGGGAGGAAGCGCTGCCGGTCCTCGATC 2900155 36 100.0 38 .................................... TCGGTGAAGTTGTAGATGGTCTTGTCAGCGTAGGTGTT 2900081 36 94.4 39 ..........T....C.................... GTGTATGCCGTCATCGACCCCTCCGGCGGAATTGTCATG 2900006 36 88.9 0 ........A..........T......C.......G. | ========== ====== ====== ====== ==================================== =========================================== ================== 134 36 98.7 37 ATTGTTCCGGCCTTCTAGGCCGGACTTCATTGAGAC # Left flank : GGGAGAACTGGATTCCTACACCCCATTGATGACGAGGTGACCCATGGCCCGACGAAGATATCTCATTTCCTATGACATATCGGATCCCAAGCGGCTGCGAGCCACGTTTAACCTCATGAAGGGCTACGGGAAGTGGCTCCAGTACTCGGTGTTCGTGTGTGACCTGAGCAAGGCTGAACTCGCAATGTGGGAACGGGACATTCGTGATGTGATAGCACTCGCCTACGATTCGGTGGTGGTGATCGACCTCGGTGCCCCGCAAGACGCAGACATCCGTATGCTTGGGGTACCGCGTAGGTTGCCCGATGAGGGGCCCGTGGTGGTGTGAGCCGCTGCGAGACCTCCGGTCATGTCGTCTCCCCTAGGGAGCGCTCGAAGGGGTTTGACTAGGTGTTTTACCCCATGACAACTCAACAGAGTGGTTTTATAGGACCCGGCGGTGCGGAGAGCTCGCAGGTGCTGGTAAAGTCCCTAGTCAAGGCGGCCTTCCGAGGCGAGCC # Right flank : CATCCGGTCATGTTCGGTGCTTGTTTCCGCGCCGCGGGTTGTTTCGGCTTTCTGGGGTGGATTCCGCCGATAAGCTGAAGCGAAGCTGTCGTGGCTTCTTGGTTACCGTCAAGGTGGACATTCTTTGGGAGAGCGGTGTCGCCTACCGTTTTTGTGCACTAATCGCCGGGGAACCCAGAACGGCGGTCTTGCTCCGTTGGCGGTTTCCCCGGCGATTCTTGTGCGAAATATGAAATCTTGTTAGCGGGTGTGGATGAAAGTATTTCCCTAAGGTTTCTCCACGGGCTGCTCATCGACGGTTGACGCCCTTGGTTGGGCGGGCTTGAGGATGGGCATGAACAAATTTCGTGAAATCTCTCGCGATGGGATCGCGACCTGCTGGCCTTGTTGGCCTTACGCGTGCAGGTGTTCCTTGTGCTTTTCTGCCACCTTTTCCGACTCCAGTTGCAGGGTGCAGTGCTCGATGCGGATCTCGTGATGTTTGATCAGGCACTCCTGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTTCCGGCCTTCTAGGCCGGACTTCATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.40,-14.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 2991216-2992034 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134535.1 Arachnia propionica strain NCTC11666 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2991216 37 100.0 33 ..................................... AGAGACAACATATCCCACTTAAGATACTCAGAC 2991286 37 100.0 42 ..................................... AACGTCTTGCTGGTCTCTATGACCTTCTCGCCATATTGTCTC 2991365 37 100.0 32 ..................................... GAAGCTGGATAGATCCATTCGATACGGTCAAT 2991434 37 100.0 32 ..................................... CACGGCAGTGCCGAGGACGATAAAAGGAAGCG 2991503 37 100.0 31 ..................................... CGGAACAGCTTCGGCACGAAGCTGAAGGCTT 2991571 37 100.0 32 ..................................... AGAGCCCGCCCAGTAAAATCCGCTGTGTAGAT 2991640 37 100.0 36 ..................................... ATAATCCATTTCTCGGGAAATGCTTCGCCGTACCTT 2991713 37 97.3 36 ...............A..................... CCAGACTAAAGGCATCCGCCACCTTGGACTTTGCCT 2991786 37 100.0 32 ..................................... TTCAGATAACGTTTTTTAACGTTACCTGTGAA 2991855 37 100.0 35 ..................................... CGTTGGAGATGAAAGATTAACGCTCCATGCCACTA 2991927 37 100.0 34 ..................................... GGGATCCGAGCGAGGACTCGTTGATTCAGTTGTA 2991998 37 97.3 0 .........................A........... | ========== ====== ====== ====== ===================================== ========================================== ================== 12 37 99.5 34 GTCTGGAAGCACCGCGAACCTTAAAGCGGATTGAAAC # Left flank : GCCAGGGACAAGACCGCGGGGCAGAGCGTGACGCACACCCCGCCGGTGACGAGGATCAGTCACGTTCTGGAGGACACAGGCCACAGGCTGGCGTGACAGGGCAGCGGTGGTGGCGGGTAGCTGACATCGACGCGGACTCCCCGGGGTGAAGGGTTGATCAAGCACCGCTCATCGCCCCCTGCAGGGCCCGCGCCCCCGTCAAACCACCCAAGCCACCGAGTTTGCCGATCCCTGAGTCACGGGCTCGTCACGGGATGGGATGGCGTGGGGGTAGGGTTGGAGGAATCCGGCGCTCCCGGCTGCCTGCTGGGTGTTTTGGAGACACCCCCGGACAGGGGTGTTGGAGAACGACCAAAAATGGCTTCAGGTGTGTATGGCACTTGACTAGGGGTTTTACCCCTTTGAGGACAGGTTCTGTCCTCTGGTTGGAAGGGGCGAGGAGGGGTGGTGTGTAAAACCGCTGCAACGGGGCTTGTCAGGACGGCGTGTCATGGGGTAGG # Right flank : CAATATCCAGTTAGAATAGGGGGTATAAGGTGCTTGGGTCTGGAAGCACCGTGAGACTTGTTCACAGGCGGCGTATCGACCAGCAAAACCCCAGCCAGAACCCATTTGGCAATGGCCGTTCACAAGTCTCACGACACAAACTCATGTCCCACGTGTTCGATTGAGCCTGTTTTTCGTCACCGCCCAGGAAACGTGCAGCACCCCAATGACACGCATCGGGTTCTAGGCTGGGCGCCATGAGGACTCCCCGGCTGGTCGCGGACGACCTCGTGCTCGAGGCACCGGACGTGGCCGACGCCGAGGACTGGTCGGATGCGCAGGACGACGAGTGCGCCCGCTGGTTCGGGTGGCCGTGCCGGCCGGGTGTGGAACGCTGCCGGACCCATCTGGAGCGGGTCGCGAACGACGCGGAGCCCGGTTCCTTCACGTGGGCGATCCGCGTCCCGGCCGGGTTCGCGGGAGGAGCCGACCTGAAACTCCACGAGGGCCGCTGGAACGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGGAAGCACCGCGAACCTTAAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : NA //