Array 1 1516570-1515726 **** Predicted by CRISPRDetect 2.4 *** >NC_015215.1 Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 1516569 36 100.0 30 .................................... CAAAATGGATAACAATGGGCATATCATAGG 1516503 36 100.0 30 .................................... TTATATTTTTAATAATTAGCCAATTCCCGT 1516437 36 100.0 30 .................................... AACGTTGGAACTGTTCTACCATAAAGATTA 1516371 36 100.0 30 .................................... ATTCATCAAAGACATCACAAACATCTAATA 1516305 36 100.0 30 .................................... TATGGAAGAAGCTCTTCAACGTAAAGCAGT 1516239 36 100.0 30 .................................... TTATATAACATCAATGATTGAACAATTCAC 1516173 36 100.0 30 .................................... AATACCGTTATCAGACCAATCAAAGCCAAC 1516107 36 100.0 30 .................................... GAGCCAACGGTTGAAAACGTTTTTGGTTCT 1516041 36 100.0 30 .................................... CTTTCAATAGCTGAATAGCCTGCTAAATCT 1515975 36 100.0 30 .................................... GCAGGAACTACTCCAACTGTTCCACCACCT 1515909 36 100.0 30 .................................... CAGATTGGGATACGCCACTTTCCTTGTCAA 1515843 36 100.0 46 .................................... CGAATGGTTCCAAAACCTGCCATTAAAATAACACCGCTAAGAAGCA 1515761 36 97.2 0 ..............T..................... | ========== ====== ====== ====== ==================================== ============================================== ================== 13 36 99.8 31 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATCACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGTGCAACATTTAACATCGTTCACGGTTCAGACTCACCAGAATCAGTAGAACGTGAAATCGCCCTCTGGTTTGGGGAATAAATAAAAGGAACTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGTGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : TCTAACATTAATCATTGTCATTCGAGTTGAGTTTTAGCGCTGTGCTGTTTATTTTAGCATCTTATGATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAATAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATCATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACAGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTTCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAAGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1518238-1517213 **** Predicted by CRISPRDetect 2.4 *** >NC_015215.1 Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1518237 36 100.0 29 .................................... GATGAAAAGTCAATACCATGTCGCTTATC 1518172 36 100.0 30 .................................... CAGACTAACATACACATTATACAACGAACT 1518106 36 100.0 30 .................................... CTACATCAAAGTCATTGCGTATGGTGAACT 1518040 36 100.0 30 .................................... ACATCAATGATTAAAGTTACTTCCGTTGTT 1517974 36 100.0 30 .................................... TGTGTACCAAATTACACAAGACATCTATAA 1517908 36 100.0 30 .................................... GCGCTGCTTTTCCTTATGGTAATTCAATGC 1517842 36 100.0 30 .................................... AGATGGTGATATCGGAGTATTCGAATATTA 1517776 36 100.0 30 .................................... AGGACAAACTACACAAGGAACAATGGTTCT 1517710 36 100.0 30 .................................... CCTCCTTTTAAAATGGTAAATCTTTATATT 1517644 36 100.0 30 .................................... TATAGACAAAATTGTTGACACTCTCGAATA 1517578 36 100.0 30 .................................... AGGTTCATCTTCGACTGTGTCGGAACTTGA 1517512 36 100.0 30 .................................... CGAAGTATTCAGACCTGCAACAACGGACTC 1517446 36 100.0 30 .................................... GTATCTTCTTCAATAACAGCTGAGAAGTAA 1517380 36 100.0 30 .................................... ATTAAAGTTAGACAAATAATCGTAATATGT 1517314 36 100.0 30 .................................... TAATTTTATCGTCGTAGTCAACGACTTTGT 1517248 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ATCCAGCAATTTTTCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATTTGGTGGTGGTACCGAAGGTGATGATGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTAGAAAGCTCATTGGCTGCTTATCTAGATGAAGGTTTAGAGCTTCCAAAGGTTGTTAATATGAGTGAATTATCAGTTGAAGATGGTTTTATCACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAGCCATTCGAAAAAATGTTACTGTTCCAGAATGGTTAGTCAGATTAGCAGACCGTGAGAATGTGAATTACTCGGAGGTTTTGACACAAGCTTTAGAGAAAAAATTACAGCTTTAAATTGCTATAAACGTTGTAAAATCAAGGCTTTTGAGGTATAATATAGTTAAAAATAATGAACCATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : GTCTGGTATTTAGGATTTATCAGAAATAGAATGCCATGAAACTTATTAAAGTTTTAGTGAAAACGCCTTTCAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAGACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGTGTGAGACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATCACTGGCGTTATGTCTGGAAATGAAGTCATCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGAACAATCCGCGGAGATTATGCTCAAGCACCAGACGAAGGTGGTGCAACATTTAACATCGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //