Array 1 4236-4383 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRJW01001002.1 Pseudomonas aeruginosa isolate 139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4236 28 100.0 32 ............................ GAAGCGACTTAGCACAACCTCCTCCAAGACTT 4296 28 100.0 32 ............................ ATCCGGTTTGCGTAGACGCGGTTGGCGATGCG 4356 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCTAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCTCGGCCTGGCCGGGGGCGTCGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGATCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTTTCCCCGGCAACTCCGCACACCTGTCAGCCATGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCC # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1111-2117 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRJW01000503.1 Pseudomonas aeruginosa isolate 139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1111 29 100.0 33 ............................. TTCGGCATTGTGCGCGGTAGCCACGTACCCTGG 1173 29 100.0 32 ............................. CCGAACTGATTGCCGCTGGCCAGGTCCTGGTC 1234 29 100.0 32 ............................. TTGCCTGAGTTCCGCAGCGCGGCGATCAGCGC 1295 29 100.0 32 ............................. GACTTGGCCGGCTTGAAGAGCTACCTGGGCCA 1356 29 100.0 32 ............................. CCGTTGATCAGCAGGCCGGTGTTAGGCCCCAT 1417 29 100.0 32 ............................. ACCTGAAGCGCGAAATCATCCTGTCTGACGTG 1478 29 100.0 32 ............................. GCGTGACGAATTGGCCCGACAGTTCAACAGCG 1539 29 100.0 32 ............................. ACATAGCGAGACCTTGGCCGATCAACGGCATC 1600 29 100.0 32 ............................. CAGATCGAGAATGCCCAGAAGGGCATTGGGCG 1661 29 100.0 32 ............................. CGTGAAGCAGGCGGACCAGATCATGACCGACC 1722 29 100.0 32 ............................. CAGGCGCGCGATTCCGTGGCTGGACTCGGTGA 1783 29 100.0 33 ............................. GTCACGGTGAACGGCAAGGGCCTGGTCACCGGC 1845 29 100.0 32 ............................. CCGCCATGGCCGAGCGTTCGAGGCGCACCGAG 1906 29 100.0 32 ............................. AACCATGCTGGCAGTTCTCTCGACCAGCAGGG 1967 29 100.0 32 ............................. AACGCGGCGCGCGAACGCCCATCTTCCAGAAG 2028 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 2089 28 79.3 0 A..........A..C..-.....A....T | C [2093] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGGTGAGGTGGTGGGTCGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATTTCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGTTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGAGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGCGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11290-12723 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRJW01000503.1 Pseudomonas aeruginosa isolate 139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11290 29 100.0 32 ............................. GCCCTCGCTCAGCCGTCGACCGCGTCAACGCA 11351 29 100.0 32 ............................. GCGTGTCGGCTACCTGCTTGCTTCTTGGGTGG 11412 29 100.0 32 ............................. GCGTATCAGCGCAGCTCGATGTCGGACGACGA 11473 29 100.0 32 ............................. GACCAGGTCACCGCAGCCTATGAGGGGGAAAT 11534 29 100.0 32 ............................. GCCTCGCTGGATGACTTCGTCCGCACCATGAT 11595 29 100.0 32 ............................. TTGGCGGCTTGGTAGACGATCCCCCATCCCCC 11656 29 100.0 32 ............................. CAAGTACTCGGAAACTAGGAATCCATGGCTAC 11717 29 100.0 32 ............................. TTCTGTTCCCCGACCGCCGTTTGACGGTCGGG 11778 29 100.0 32 ............................. TGCTTGGCCGGCACGGTATCGGCGCAGCCGCG 11839 29 100.0 32 ............................. ATTACGAGCAGAAGCGTATAGCGTGTGCAGCA 11900 29 100.0 33 ............................. CACAGAATGCGCTCGCTTTTACTGAGCAGTGGT A [11922] 11963 29 100.0 32 ............................. TCGAATGGCAGCCAGTCGGGCGAGGGGCCGCC 12024 29 100.0 32 ............................. AGGTGATGCTCAACGACGATAAGCCCGTGATG 12085 29 100.0 32 ............................. GCGGTTTCATCACCAGCGCTACTGTCGGCGAG 12146 29 100.0 32 ............................. ATGCGAGCCTGGGCCGGACCATCCATGTGCTC 12207 29 100.0 32 ............................. TAAAAGGTGCAACACCCCTTCCTAGGCCTGTG 12268 29 100.0 32 ............................. ACGGTGATTGCGTGCCGTTCCATGACCGGAAA 12329 29 100.0 32 ............................. TCCGCGCGCGGAGTACACCTGACGGACCTGGC 12390 29 100.0 32 ............................. TACACAGCCGGGGACTCTGCCGCGAATCGTCA 12451 29 100.0 32 ............................. GGACGATGTCTCGCGTAGCGATCTCGCTCGTC 12512 29 96.6 32 .........................G... CCAACAGGTAGCCAACGCGCCTGGCGATGGTC 12573 29 100.0 32 ............................. AACGCCCTTTCCAACTCATCAGCGCCAGCAGG 12634 29 100.0 32 ............................. GCGAACCAGGTGCGCTACGGCGACATCGTCCG 12695 29 89.7 0 .G..........G..A............. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAGCCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGTGGACGTCTGGCTATCTGGCTACTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCAGCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGTGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGTTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCATGGGGCGAGTCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCCTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGTTGGGCGGGAACCGGCCAGAGCAGGGAGAGGCCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //