Array 1 12651-14952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJX010000022.1 Bifidobacterium sp. CP2 Contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 12651 33 100.0 33 ................................. CGTCGATCTCGCAACGTCTTCCCATATCCAAGA 12717 33 100.0 34 ................................. AAGTCGATTCTGTCCAACGCGGCCGGCGCGGTCG 12784 33 100.0 33 ................................. CTCCTGCGGCTCCGCAACCCATGGACCGAACGC 12850 33 100.0 33 ................................. CCCGACCACAACCCCGGCAACCTCACCGCCTGC 12916 33 100.0 35 ................................. GAGATCGACGACGTCGAGAAGCGCCAGGCGATGGT 12984 33 100.0 32 ................................. ACGGCCGTCGCGCCGCCCGCGGGCGTCACGGA 13049 33 100.0 32 ................................. GCCATCACCGTCGTCTCCGCGAACAAGGTCAC 13114 33 100.0 35 ................................. CTGAACGTGTTGAACGCGTACGGTGACGTGGACCG 13182 33 100.0 34 ................................. AAGACCACCACGCCGAATTATGTGACCGTCACCG 13249 33 100.0 36 ................................. GTCCCGTTCTTGAGTCTATGGACGACGGTCGTCCTG 13318 33 100.0 34 ................................. TATGACGATGTTCATGAACTGCATACAGCGTACA 13385 33 100.0 33 ................................. AAGGACCAGACGGACATCGACACCACCTACCAG 13451 33 100.0 34 ................................. ATCACCACGGCCACGCCATCGTTCCACGAACGCC 13518 33 100.0 33 ................................. TCAAGAAATACGCCCAGCACGTCAAGCCGACGT 13584 33 100.0 34 ................................. TTCGCTGTCATTATGGCGTCGATTACTTCTGTCG 13651 33 100.0 32 ................................. TAGAAAGGACCATCATGGCGAAACGCAAGCAC 13716 33 100.0 34 ................................. GTGGCTAGTGCGCCGCCGATTGCGCCGGCAAGGC 13783 33 100.0 34 ................................. TCCGAACTGGACGACGAGGGCGCGTCCGAACGGG 13850 33 100.0 34 ................................. GATTACACGCGACAGCGTAGCACAGAATCGTCTC 13917 33 100.0 34 ................................. CTCCGATGGGACGGATTGAGCCTCCTGGACCACC 13984 33 100.0 33 ................................. GCCATCACCGTCGTAAGCGCGAACAAGGTCACC 14050 33 100.0 33 ................................. GCCCTGCGGGTCGGTCAACCGGAAATGGACCTG 14116 33 100.0 34 ................................. CGACCGGCGGGTATGCTCCGGCGCCGCCGGACAG 14183 33 100.0 33 ................................. CTCTCCTGGGCATCATGCTGCTTCTCATCGGCA 14249 33 100.0 36 ................................. GTTGGTCTTGTTCGCCGATTCATCCACCGACATGCC 14318 33 100.0 33 ................................. GCCGATGAAGTTGAAGACCTCGACCAGGCGAAG 14384 33 100.0 34 ................................. CGCATCCAGGACGCGCTCGTCAGACGCGCCCGAC 14451 33 93.9 33 ...............................TC CTTTCTGTTGGTGGCTGCGTCGTTTGGCTTGGG 14517 33 100.0 36 ................................. CTTCCGTTGGGTTGTGGTTATGCGAACAGTGCGAAC 14586 33 100.0 35 ................................. CACGCGCGCGGACGCGATGGGCCCGAGCCCACGAA 14654 33 100.0 34 ................................. CGCATCCAGGACGCGCTCGTCAGACGCGCCCGAC 14721 33 100.0 34 ................................. CCGACGAAACAACGGAAGGGGGTGATCAGCATCC 14788 33 100.0 33 ................................. GCGAACCGGTTGCCGTAGTCCAGCACGCCTCCG 14854 33 100.0 33 ................................. AGCATCCATCACCGGCATCTCCGCTCCCACCCC 14920 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 35 33 99.8 34 GTCGCCCCTCTCGCGAGGGGCGTGGATTGAAAT # Left flank : GACAACGGGTACAGAACAGTGTCTTCGAATGTTCGGTGACTCCGTCCGACTATCTGACGCTGAAACACGATTTGGCGGCAATCGTGGATGAGAAGTACGATAGTCTGCGCTACTATAACCTCGGTTCCCGGTACTCCTCGAAAATCGAGCAGTACGGCAGGTGCAGACACGTTCCGGTCGATGGGGTGATGATGCTCTGATGGGGGAGTCCCACGGATTCACGTGTTGATTGGGATCGTCGATGGCCAGTCGGGACATCGGATAGCCGGTGCGAGTGACAAGCGCTCATGGAATCCCCGACCTTTCGCACCTGCGAAATGAGTTTGCGGAGACGACTATTCGTCTTCCCCGGACGCTTGATAATTCAAGAGCGGATGATTCGCGGCCAATTCGCGAGTCGTCATGTGATCCTTCGCGGGGTTGCGGCCGGTTTCTCGCTACAATCAGCATTGAGAACGGACGTCGGTTCCGTATGTCGGAACAGGATGTCCATTTTCGCG # Right flank : CTCGAACGTGAGGCCCTTGGGGGGTGTTCCTATGTTTTTGTCAATTCCGTAGGGGGTTGATGTGTCGGGTTTTGTTTGGTTGTCGTGGGCGTGCTTCGCCTTGCCGGTGGCGGCTGGTGTGTTCGTCCTTCGTGGTGTTCAGGCGGCGAGGGCCGGTTCCTGGTAGAGGGTGCCGTTCTTGAGCATGCTGTAGATGACATCGCAGCGGCGTCGGGCGAGGCAGATGACGGCGGCGTTGTGGTGTTTTCCTTGTTCGCGTTTGCGGTTGTAGTAGGCGATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCTCGCGAGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6483-2674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJX010000003.1 Bifidobacterium sp. CP2 Contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6482 29 100.0 32 ............................. TAGGAAATAACGTTATGCCGGCCTATGCGGGG 6421 29 100.0 32 ............................. TGCTCCAACTCGGCTTCGAGCATGTCGGTGTC 6360 29 100.0 32 ............................. GGCGGCACGTGGCGGAACGTGGCGGCGCATGG 6299 29 100.0 32 ............................. TGTACACGTCCCGGCTCATCCACCTCATCAAA 6238 29 100.0 32 ............................. CAGCTCGTCGCCCTCACTTGGAACGTCGGCGC 6177 29 100.0 32 ............................. GTGCTGTCGGCCGTGCCCTCGGTGCTCATGAC 6116 29 100.0 32 ............................. CCCCGCACACGCCGCATCATCGGACACTGCCC 6055 29 100.0 32 ............................. GCGTGTTCCGCGACGGGCGCGGCGGGCCGCTG 5994 29 100.0 32 ............................. GGCCCGGACACGATCCTCGGCAGCACCCCGCC 5933 29 100.0 32 ............................. CGACCGGACTCGCGAAGCGCTCCCGTCTTATA 5872 29 100.0 32 ............................. ACTTGGCAGTTCGCGGCCGAAAAATACTCGGA 5811 29 100.0 32 ............................. TGGCAGGGATGCGTGAACGCTTCCCGTGCCGC 5750 29 100.0 32 ............................. GGATGCATGATAATAGCCATGGGAACTCCTAA 5689 29 100.0 32 ............................. TGCCAAGTGTTCACACCGGGCAATGCCGCCGC 5628 29 100.0 32 ............................. TAATCGCAGACATGACGGCGGTAACAATACCC 5567 29 100.0 32 ............................. GGCGACAAGACCAACGCGTTCGCGAAACTCCA 5506 29 100.0 32 ............................. ATGTTTTGCGCGCCCTGCCACGCCTGCGTCCA 5445 29 100.0 32 ............................. GGCGACCTCGACTCCAACAATGGCGACGACAT 5384 29 100.0 32 ............................. GATCTGTTTCTAGTGTCGCGGCTCTTGGGCCA 5323 29 100.0 32 ............................. ACGTTCATGGACAAAACCACGTGTGACGGCCA 5262 29 100.0 32 ............................. GCGGCACCATCACCGTCGTTGAGCAGCATGAA 5201 29 100.0 32 ............................. TATGCGTCGAACTGCCAGACCATCAGCATCGA 5140 29 100.0 32 ............................. TACACGACCGCGACGGAGACCGTGCCCGCCGG 5079 29 100.0 32 ............................. GACATGAGACCTAACGAATCGTCGGGCCACTC 5018 29 96.6 32 ............................A GTGCTCGCCATGCGTGGCTCCCCTTAGGCGAA 4957 29 100.0 32 ............................. CGAATACAGCGTTGGGTGGAAACCGCCCTACA 4896 29 100.0 32 ............................. CCATATAGAGGCGCGTATCGGCTGTTGCCTTG 4835 29 100.0 32 ............................. TGATCCACACCGACGCGTCCCACACGGACATG 4774 29 96.6 32 .......................A..... GCATCAAGCCGCCACGGTAGGACACCGTGACG 4713 29 96.6 32 ............................T CATGCCGTTGGGCCCGAAGGCCACCGCCTGAG 4652 29 100.0 32 ............................. ACGTCGTCAACCAGGAAACCAATATCAAGGAG 4591 29 100.0 32 ............................. GACTGGGGAAACTTGCCGAATGCGGCGGCCAC 4530 29 100.0 32 ............................. GTCAGACATCGAAGAGTCGGAGGGGAGCTGCA 4469 29 96.6 32 ................T............ CCCAAGACCAGCAGTAACCATATGACGGGCGT 4408 29 89.7 32 ..........................TAG CGTTGCGCCAACGTCTGCTTGCGTTTCGCGCA 4347 29 96.6 32 ............................T TCCACGTCCATGCCGTCGCGGACGGTGACCTT 4286 29 100.0 32 ............................. ACTCTCGACGCGCGGATGCGCGAGCTCGTAGA 4225 29 100.0 32 ............................. TGGCAGAAGGGCATCGACCTGTCCCGTGTGCC 4164 29 100.0 32 ............................. TCGCATCCGACCTCACGCCGTTGCACGACAGT 4103 29 100.0 32 ............................. TGATATGCGGCGATGGTCGGGTCCGTGACGCC 4042 29 100.0 32 ............................. GCGTGCAGGCCGAAACTCAACAGGTCCGTGTC 3981 29 100.0 32 ............................. CGTGTTGTTATCACGTCTTCCGGCGTCAGGGG 3920 29 100.0 32 ............................. CGCAAAGACTGGCGATGAAAAGACGTGGGGTG 3859 29 100.0 32 ............................. GTTGACGACATGATTGCCGACTACGAACGCGG 3798 29 100.0 32 ............................. TTGGCCGTAGGGCACGGCCACGCCTTCCAGCG 3737 29 100.0 32 ............................. CGCGCGTATCGATTTCGGCTTCGAGGGTAATG 3676 29 100.0 32 ............................. AAGCTGCTCGCCAACCCGGCAGCCAAAGGCAG 3615 29 100.0 30 ............................. CCTTCAGCTGCCGGCGGTTGAACAGTGGCG 3556 29 100.0 32 ............................. TGGTGATGACGCTGGTGGCGGACCTCGCCACC 3495 29 100.0 32 ............................. TGGTGCGTGGTGATCATGACGATGTCGCGGCG 3434 29 100.0 32 ............................. GGTTACCCAGAAGGGCGCGACGCTTCGGGTCA 3373 29 100.0 32 ............................. GCGTCGAGCAGTGTGTCGATGCGGTTGGCCTG 3312 29 100.0 32 ............................. GCGCGCACCAGCACGCCGCCCAACTGGTCGGG 3251 29 96.6 32 .......................A..... GCTATTCCCGGCGTCCGTTATGGCGCGCCGTC 3190 29 100.0 32 ............................. TTTGGCATGGCGATACCGGCGATGCTGTCCAT 3129 29 100.0 32 ............................. ATGCCAGTCAAGGGCACTTCGAAGGTTTGCTC 3068 29 100.0 32 ............................. TGGGGGCGATGCTGTGGCGCAATGGGAAGGCC 3007 29 100.0 32 ............................. TCGTCCGGGAACAGCTTGAGGATGTAGTTCGC C [3002] 2945 29 100.0 32 ............................. GTGAGCACGCCGGACGGGCGCGCGGCCTCGTC 2884 29 96.6 32 ................T............ AGGTGCGTGGCCGGGTTGGGCGCGTCGTAGTC 2823 29 100.0 32 ............................. GCGATTGGGGCACCGCCGTGAGGATCCTCGAG 2762 29 100.0 32 ............................. GTCGCTTCTTTCCTTTCAGGGTGACGTGTTGA 2701 28 75.9 0 .............G.....T.-..T.TTA | ========== ====== ====== ====== ============================= ================================ ================== 63 29 99.1 32 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : CTTCGACCATCGTCGACCAGCTGCCCGTCGAGCTCGACAAGCGCGGCAATATCGCCCGCAACGACAAGTTCGCCACCTCCCAGGACGGCGTCTTCGTGTGCGGCGACGCCGGCCGCGGCCAGAGCCTCGTGGTGTGGGCCATCGCGGAGGGCCGCTCCTGCGCGGCCGCCGTGGATGAATACCTGTCCAGCGAGCACACCAGCGAGCTGCCCGCGCCGATCACGGCCTCGCAGCGTCCGATGATGCTGCCCCGCTGATACATGGTTGATACCTGTCCGATAGAGGGGATTCGTTTGCTACTCCGACCGTGACACGTTCCTCTGGGTTGGAATCATTTAAGGGTCTCTTGTATATGCCAGTTGCCTGATTGGCATATGCAAGAGACCCTGTTGCATTGCATGGCATGATCAGAGAGTGTTCTGGGCTATGGACACTCTGAAACCGAATGAAAATACTTTGATTCCATACCGTATATGCTGGTATATAAGGGATTTTGAAGT # Right flank : GCAAGTTGGCGTCCGCTTTGTGAGCGGTGTTTTTCCGCAGTGTAGGCAGCGGGTTTCCCGCGGCGTGAGCGGTGGTGCCGCTGCCTGTGTGCGTGTTGTGTTGTTGTGGTTGGGTTATTTGGTCATGAGGGCGTGTTCGCTTCGGTAGGAGCGGCCCTCGAATCTGATGAGTCGTCCGTGGTGGACGGTGCGGTCGATGAGGGCGGCGGCCATGTTCTTGTCGCCGAGGATGCGTCCCCATCCGCTGAATTCGATGTTGGTGGTGTAGATGATGCTCCTTGTCTCGTAGCTGTCGCTGATGATCTGGAAGAGGAGGCGGCTGCCTTCCTCGTCGATGGGCAGGTAGCCGAACTCGTCGATGATCAGCAGGCGCGCCTTGCCGATGGCGGCGAGCTCCCTGTCGAGACGGTGCTCCTGTTGGGCGCGGCGCAGGCGCATGAGCAGTCCGGTCGCGGTGAAGAACCTGACTGGTACGCCTTTGTCGCAGGCGAGCCTGCCGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81268-80568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJX010000012.1 Bifidobacterium sp. CP2 Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81267 29 72.4 32 AA.CAATA.A................... CGTCCACCATCGTCAACGGGTGCAAAACAATA 81206 29 100.0 32 ............................. GCAAGGAACGTCGCGTCTACTTGACGATTCCC 81145 29 100.0 32 ............................. AGGTCGGCGGCGACCGCCAGCACGCAATCGGA 81084 29 100.0 32 ............................. CGTCCACCATCGTCAACGGGTGCAAAACAATA 81023 29 100.0 32 ............................. AGCGCGCAGATGCTGAACGCGGCGACGACCAT 80962 29 100.0 32 ............................. GGATGTATACGTTGTATCTGCCTCCGCTTTCC 80901 29 100.0 32 ............................. TTCCCGATTTGCGGCTATGGGACAAAGCGAAG 80840 29 96.6 32 ..........................T.. GGTTCGGGTGGATGGTGAGCGGTTTCAACGAT 80779 29 96.6 32 ...................A......... ACGCTGCCGGCCCCCTTGGTGCGTCGTGTCTG 80718 29 100.0 32 ............................. ACCAGCGACGACTCATACAACCTCGACCACTT 80657 29 100.0 32 ............................. CACACCGGCCGCGACTCGTACCGGGTCCGCTG 80596 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.8 32 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GACCATCGACAGGTTCACCGCCATGCTCGACGAGTACATGGTCTGGTACAGGGACAAGCGCATCAAGACCGAATACGGCATGAGCATCATGGACAAACGCGTCGAGCTCGGGCTCGTCGCCTGAACACCTGCGATAACGTGCTGAACGACCATACAGACAACGAAGTCCAACAAAACGTCACCGCCCCCAAACCATCAGCCCACACTGCGGAAAAACACCGCTCAACCTGACGAACAAACATT # Right flank : TGTCCGTACCAGGTGCCGGTGAAGTCCATGGCGGGGACTGCCCCGGAAAGTGTGTAACTGGCTTTGATCGCTGGTCGTGAGACCGGTGGGAAAGGGCCTGTGATGAGCATGCCGACTGAGACAATGGAAACCATGACAACGACGACGGCCGTCGGCAAGGAAGCCACGAATAAACCAAGGAAACGCAGGGCGCCGAAGACGTCCCCGGTCGAGCGCGAGCTCGCGCTGGAGATGATCCGTAAGGCCAAGGAGCAGGGCCTCGACCTGACCGGACCCGATGGGCTGCTCAGACAGTTCACCAGGACCGTGCTCGAGACCGCTCTGGACGAGGAGATGACCGAGCGCGTCGGCCGGGCCAGACACGAGAAAAGCGCGGAGGGTAGGGCATCGAACACGCGCAACGGCACCACCTCGAAGACCGTCGTGGCCGACGCGGTCGGTCCCGTCACCATCGAGGTGCCGCGTGACCGGGACGGCTCGTTCGCGCCCGTCATCGTCAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5732-6007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJX010000007.1 Bifidobacterium sp. CP2 Contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================================================================== ================== 5732 27 96.3 90 ...............G........... GTCATCGCGGTCGGAACGGTCGGAACGGTCGGCGCGGGAGCCGCGACGGTCGTCGCGATCGTAGTCGCGGTCGTCACGGTCATCGCGATC 5849 27 100.0 45 ........................... GTCGTAATCGCGGTCATCACGACGATCGTCGTCGTAATCGCGGTC 5921 27 100.0 33 ........................... GTCGTAATCGCGGTCGTCGTCATCGTCGCGGTC 5981 27 74.1 0 CA.C.G...G..A...........G.. | ========== ====== ====== ====== =========================== ========================================================================================== ================== 4 27 92.6 56 GGCGGAACGACGGCGACGCGGACGATC # Left flank : CGACCTGGCAAGAACCACCCGAACCGCTTCACAATCCCCCCCTCTCAGCGAGGCAATCCGTCAGGAAACCGCTGACTTGCTTCACTAACCGGTCACCCCACGAAGCAAGACGACAAGAACCACCCGAACCGCTTCGCAACCCCCATCTCAGCGAAACAACCAGTCAGGATTCCGCCGAACCGCTTCACAAACCAAGCACCATGCGAAGCATACGAAAGGGGCCGCTTCCGAAATGTTTTCGGAAGCGGCCCCTGACCAGTCGGACTCAATCAGGCCCACGCTTCAGGCGTCAGACCCAGGCCCCAGCATAAGCCGAATCAGTCCTCGAACGGATCGAAGTCGCGGCGCACGCGGCGACGCGGGCGCTCGTTGCGCTCCACGCGGTCGGCGTGGTACTCGTCGTAGTTCTCGTCGGTGGCATAGCGCGGGTTGCGGTCGTAACCACCGCGGCCACCACGGCCGCCACGGGAGCCGCGACGGTCGTCGCGATCATCGCGATC # Right flank : CGTCGAAGTCGCGGTCGTCACGATCGTCACGGTCGCGACGCGGGCCACGGCCGCCGCGCGGACCACGGTCGCCACGATCGCCACGGTCATCGCGGTCGTCACGGCCGCCACGCGGACCACGGTCACCGCCGCGACGGGCGCCGGACTCCTGGTCCTCGAAGCCGGGGATGGCGAGGGAGATCTTGCCGCGGTCGTCGACGCCCTGGACGACGACCTCGACGGTGTCGCCCTCCTTGAGGACGTCCTCGACCTGGTCGATGCGCTCGCCGTTGGCGAGATTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCCGGCGTGAGGTTCACGAACGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTCTCGCCCGGCTGCGGCACGTGCGGGTTGGCAATCTGGTCGATGATCTCCTTGGCCTTCTGCGCGGCCTCGCCGCCTTCGGAGGAGATGAACACGGTGCCGTCATCCTCGATGGCGATCTCGGCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-2.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGAACGACGGCGACGCGGACGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //