Array 1 23959-23329 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKG01000119.1 Helicobacter cinaedi strain PAGU1382 entry119, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 23958 36 100.0 30 .................................... CTCGCTGGTGGTCTTGGAGGCGCTGGTTCT 23892 36 100.0 30 .................................... TTTCATCTCAAACCTCCGCATAAGTCCTAT 23826 36 100.0 30 .................................... AGTTTTGACTTTTTACAAAGACATTGTTTT 23760 36 100.0 31 .................................... CAAAGCGTTGCTCTGGGCGGCTACTATATCT 23693 36 100.0 30 .................................... ATACTGCAAACAAAGGCACTTTTGGCATAA 23627 36 100.0 30 .................................... TGTAGGGGATTGCTTTGTAAATCATCTTTT 23561 36 100.0 30 .................................... TTACTTGCCGATGAACCAACGGGGAATCTT 23495 36 100.0 30 .................................... GATATTTTTGCGTTTTTCCTTGATGATTCT 23429 36 100.0 30 .................................... TTAGAATCTCGTATTAGCAATGACTTTTCA 23363 34 86.1 0 ....................A--.........T.T. | T [23334] ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.6 30 GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Left flank : ACATTTTGGTATGACTTGTTTGGATAGAGTTGCGTGTTTTAGGATATTTCAAGCTTTGAAAACGCTCAAAGCACACACTAGAGCCGACTTGGAAAAGTC # Right flank : ACTCTAATGCTTTTACTTGTTGTATCAAAGTTTGTCTATCTTATGTCATTACTAGGGCTTTGCCAAAGTATATAATCCACACAAACAAAAATCCTGTTATTTTTCTACAAAGTCTTGTAAGATTCTTAAATTTAGCTAGAATGCTGTGTAAAAAAATGACATATTTAAAAGGAAATAGATGAATAACTTCAGCAAAATCGGCTTTGTTTTGGCGACTTTGGGTAGCTCCATAGGCTTGGGGCATATTTGGCGGTTTCCCTATATGGCGGGGGAAAATGGCGGCGGAGCGTTTGTAATATTTTATCTTATCTTAGCCATTCTCATTGGTGCGTCTATGCTAATGGCGGAAATGCTCCTTGGCAATAAGGCTAGAAGTAATCCTTTGGATAATTTTACTATCCTTAATAATCTTAATAAACTTCCACCAAACACACCCACACAAGATCACAATACCACAGATTCTAAGTCTGGCTCTTCACTTATGTGGCTTGGCTTTTCTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTGGGACCCGATTTGTGAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 1-230 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKG01000237.1 Helicobacter cinaedi strain PAGU1382 entry237, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================= ================== 1 34 100.0 33 .................................. TTAATCAAATTGAGATACAAAATCAATACAAAG 68 34 100.0 32 .................................. TTACTTACCATCAATCCTATGTGGGTATTCTG 134 34 100.0 29 .................................. TTTTTTTTTTAACCCAATGGTGAATTTGG 197 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================= ================== 4 34 100.0 32 TTTTAGTCCCTTCTTAAACTTCTATATGCTAGAA # Left flank : | # Right flank : | # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTAGTCCCTTCTTAAACTTCTATATGCTAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.59%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1778-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKG01000037.1 Helicobacter cinaedi strain PAGU1382 entry37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1777 36 100.0 31 .................................... TTGAATCAATTTTTCGAACAACATTCGGAAG 1710 36 100.0 30 .................................... CCCATTATGTTACCGGCAAAGTTGAAGATA 1644 36 100.0 30 .................................... GGAATTAAGATTCATACGCCGAAAACTTTT 1578 36 100.0 30 .................................... AGCAAATCAATCTTGCAAATCAGCGAAGTG 1512 36 100.0 30 .................................... TAAACGTCCTTTTGTTGAAAAAACTCATCA 1446 36 100.0 32 .................................... ATATATTTCGCTTCAGCCACAAGAGAATTTGA 1378 36 100.0 31 .................................... CGTCGGTGGTTTTAAAACAGGATCCCTTGCT 1311 36 100.0 30 .................................... CCACAGACACGTCTATCACAAGTTTTTCTA 1245 36 100.0 31 .................................... TGATGAATTCCAACAAAAGAGCATTTTACAA 1178 36 100.0 31 .................................... GGAGAAACAATGAGAGAAGTATTAGTTATGG 1111 36 100.0 31 .................................... CTCATGGCTTTCAGATTTTATCGCCGCAGAA 1044 36 100.0 30 .................................... ACCTATGATATGGATATTGAAAATGATGAT 978 36 100.0 32 .................................... ATGTGTGCGTATGCTTTAACTTCACTTGTTAG 910 36 100.0 30 .................................... AAGTATATTGTTTGCCTCTTTTAAAGAATG 844 36 100.0 31 .................................... ACAAGAGCACAATATATAAAGAATTTGATGA 777 36 100.0 24 .................................... TGTGTTTGTATTCTTTTTTTTTAT 717 36 100.0 31 .................................... TCGCCATATGGGCTCCCTATGCCCTGTGGCA 650 36 100.0 30 .................................... ATTCACAAACAAGAGGAATCTAGCAACAAT 584 36 100.0 30 .................................... ATGGGATACTGAAACTCTTGAATTTGTGAT 518 36 100.0 31 .................................... ACAAAGGCACAATATATAAAGAATTTGATGA 451 36 100.0 30 .................................... CTTTTACTTGCTGATACTGAAAACTTTGAA 385 36 100.0 30 .................................... TCTCAGACGCAGTCAAATATTGACGCTCAA 319 36 100.0 30 .................................... GCGCCGTTGTAATGCCAAAGGCTTTCTGTT 253 36 100.0 31 .................................... AGCGAAAGCGCCGTCTATAAAAAAACACCGG 186 36 100.0 30 .................................... GCCAGCCGCCACTGCTGTGATTGTCTTTTT 120 36 100.0 27 .................................... CAAATTCACCATTGGGTTAAAAAAAAA 57 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 27 36 100.0 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : CAGAATACCCACATAGGATTGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 1822-1458 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKG01000028.1 Helicobacter cinaedi strain PAGU1382 entry28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1821 36 100.0 31 .................................... TTTGTATTGATTTTGTATCTCAATTTGATTA 1754 36 100.0 30 .................................... GCCAGCCGCCACTGCTGTGATTGTCTTTTT 1688 36 97.2 30 .........................A.......... CAGGAAATAATGCAACAAGAGCTTTTTGCT 1622 36 100.0 30 .................................... TCTGGTCTCCTAGCTTCAGTCGCCCAATGG 1556 33 91.7 30 ..........---....................... GCGTTCAAATCGCTTTAAATTCTTTGCTGA 1493 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 97.7 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : AGGATTGATGGTAAGT # Right flank : TAGTGAGATTGAAGCCAATTGGATACGAATAATGGTAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCACAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTTAAGATAAGTGCAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGCT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 189-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGKG01000038.1 Helicobacter cinaedi strain PAGU1382 entry38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================== ================== 188 37 100.0 30 ..................................... TTTGTATTGATTTTGTATCTCAATTTGATT 121 37 100.0 26 ..................................... CAAATTCACCATTGGGTTAAAAAAAA 58 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================== ================== 3 37 100.0 28 AATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : AGGATTGATGGTAAG # Right flank : CAGAATACCCACATAGGATTGA # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.19, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //