Array 1 4898-5187 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYW01000004.1 Clostridium botulinum strain LNC5-DC contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 4898 29 100.0 36 ............................. GATTTTAATTTTAGTAATGTCGTTAGTATATGATTA 4963 29 96.6 36 .........A................... AAATCAAATGGAGGGACAAGGATGGTATGGTTGTTA 5028 29 100.0 36 ............................. TCTACAATAAGACTAAATGCTATTCCAACAACTAAA 5093 29 100.0 37 ............................. GAAGGTACTGGTGCTTTATATAAAGATACTGCTTTAT 5159 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ===================================== ================== 5 29 98.6 36 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : AGGTTAGTTTTAATCATTTACTAGCGTTAATGATATTAGCATAGGAGAAATATTTGATAATATTTTTGAAAGTGGTGATTTCATTGATTGGATATGAAAGCTTATATAATGAAGACTATTTGCAAATAGGAAAAGGGAAGTAGTTTAGAGTAAAAATGTACATAAATACTTATTTTAATATATATATACAAATATAGAAAAAATTTAACAATAATATTGAAAAATAATTCTTAAATTACATAATTATAGTATAATAATAAAATAGAAGGGAGATGAAGATAATGGAATTCAAAAAATTAGTATTAACATCAAAAATGGCTCATTTTAAAAATGGAATTAATGGAAAAAATCAAAATACTTTTAGAGTTCCTCCCATATCAACCATAGTTGGTATATTAAAAAACATCTATGGCAAAGACATTAAAGATTTTATATTTGGATACACCTGCAAATATGATGGTATTTTTAAAGATGATAGTCAGGCATAATATGTTCTATTT # Right flank : TCATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATGATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGGAGTGATATTCCAGTTAACATTC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 38983-38554 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYW01000068.1 Clostridium botulinum strain LNC5-DC contig_68, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 38982 29 93.1 37 ......C..A................... GATTTTAGCAAACTAGGTAAAGTAAAAAGTGTTAATT CCA,AC,A [38969,38975,38979] 38910 29 100.0 35 ............................. TAACAATTCAGATAACTGTTTTTGAGTTAATCCAT 38846 29 96.6 37 ..................A.......... TTTGATTACTTTAATACACTTATACATGGGATTACCC 38780 29 100.0 37 ............................. ATATAGCAAGTGCGGATTATCAAAAATTGATATATCA 38714 29 100.0 37 ............................. AGGAGGAAATTAATGAATAAAATTAAACAACTTTCAA 38648 29 100.0 37 ............................. TATAAATTCCTCCTATACAAGTTAGTTGTAGAGTAAT 38582 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 98.5 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : CACTTAAAGGATTGTATAACCTAGAAAACCCTAGACTTTACGGACAAAAACGCTATGAACGCCATGTTAAGTGGGTTCTTTTATCATATCTTATAGACGAATTTAATAAGGTTAATAGCAAAATAAATTCTAGAAAATATCCTTGGAATCTATAGTTTTTATCGCGCTAACGCACTTACTTTTTTAAATTTTTAAAGAACTTCCTAATGCACACTTAAAATTATTAAACACATGCTCGCGCATAAATGCTTTTTAAGATTTGTAAAAATT # Right flank : TAGCTTTGTCACTAGTTCTAAATGTTAATCTTTTTGGTTCTTTCCAATGTTTGTTGAGTAAATATTTAATTTATGATAAAATTACTTATAATTTGATAATACTAAGGAGTTTTTTATGGATGAATTTATAAAATTATTGGATGAAAATCTTGATTACATTAGTCATAAAATTATAGATGATACTTTTTATATACAAGATCAAATAATGATGTTTTAAAGTGGTTAAAGAGTTATCCTAACATTAAAGTAGTTTCTAGAGATGGTTCTATTACATATAAAAATGCTATTTCTAAAGCTCATCCATCTGCGATGCAGATTAGTGATAGATTTCATATGCTTAAAAATTTTACGGAGTATTATAAACAATATTTAAATAAATATTTTAAATCTCAAGTTATGATAAATAATAGTAATTCTAATAAACAGGAAATGAAAAATATCATAAGTAATTTCCAAAATGAAAAAGCTTTAAAAGCAAGACAAATGTTTAATGTGGGCAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 18111-18791 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYW01000051.1 Clostridium botulinum strain LNC5-DC contig_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 18111 36 100.0 35 .................................... AGTATCCCAAATTTCCATAGGCATACCTTTTCTAA 18182 36 100.0 36 .................................... TGGGTTACGCTAGATGATAAAGAAATATTTAGAGGA 18254 36 100.0 35 .................................... AGTATCCCAAATTTCCATAGGCATACCTTTTCTAA 18325 36 100.0 36 .................................... CTTGTATATTTCTTTTGATCCCAAAGGGGCTTTCTT 18397 36 100.0 35 .................................... TTATATAATAAATCTAACAATAATTTCATTCGTGG 18468 36 100.0 37 .................................... TTACTTGTCACAATAAAGTGCATCCGGAGAAATTAAA 18541 36 100.0 36 .................................... AAATTAAAAGATAAATTATCAAGGCCCTCAGATAAA 18613 36 100.0 36 .................................... AATATTTTTTCCATATATTCATTACCTCCCTATTTT 18685 36 100.0 35 .................................... TAAATAATGCTTGATTAAGCATTTTCTTGATTTGA 18756 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 100.0 36 GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Left flank : CATTAATGAAAGAAATTGAATATATACCGTTTTTAATTAGATAAGATAGGAGAAAATGTGGTATGATGTATTTAGTTAGTTATGATATTGTTAATGATAAGAAAAGAACAAAACTTCATAAATTGTTGAAAAACTATGGTGTAAGAAATCAGTTCAGTGTTTTTGAATGTAATTTGGATGATAAAAAGTATGTTGAACTTGTATATAAGATTAACAATATTAAAGTAGAGGCAGGAGATAGTATAATGATTTATCCATTATGTTATTCTTGTAAATCAAAAATAGTAAGAAAAGGTTCATTTATTGAAATAGATGTAAAAAATATGATTTTTTAATGCGCCAAGCTTAGTGTTTGAAAAAGTACGTTGACATGGCGATGGCTTTAAATAGCCATTTGTAGATAGTTTTTTATAGTATTGGTATAAAATTTAAAATAATAATAGATACTTTGCGAATAATGCGGGTCTATGTTAGTGTTTGTGAGGGATAAAACGCCGGCG # Right flank : CTTTTAGAGGGCGGAATGACCTATATACCAACGGGTGTAATAAAGATATTAAGTATAAGTGCTATTATGGGAATGCAAGAAAGTGATCATCTAAGGATATAAGAATTAGATTTATGTATAATACTATAATTACAAACATTTAAACTGGAGGTAATTATGATTATACAAATGAATATTAATTCTGAAATACAAATAGATAAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 61400-62687 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYW01000008.1 Clostridium botulinum strain LNC5-DC contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 61400 36 97.2 30 T................................... ACAGCTTTTGGGATATTGCCATTGGTAAAA 61466 36 100.0 30 .................................... AATAGGAAAGCTCCACTGGCGGAGTTAGGA 61532 36 100.0 30 .................................... AGCAAAACAGTTATTATTGCATGGAGAAGA 61598 36 100.0 30 .................................... TCATAGCAAACAGAATATACATCCTTAGTA 61664 36 100.0 30 .................................... CTAACTTATGTGCTAGAATTTATACAAATA 61730 36 100.0 30 .................................... AAGGTTATTGAAATTGAAAGTGAATCATTC 61796 36 100.0 30 .................................... AAGAAAATACATAAAGAGTTGAATTTAGAT 61862 36 100.0 29 .................................... TTCATTTAAGCAATTATCCCTATGAATTA 61927 36 100.0 30 .................................... GTAGGATATGATGAAGATTACATCATGGGC 61993 36 100.0 30 .................................... TGCTTCTTTAGATAAGCTTCCTCTATTTCT 62059 36 100.0 30 .................................... GAAAGGATTGGAGACCTGGAAGGCAAATAA 62125 36 100.0 29 .................................... CTGTTAGTGTAGTTTATGACGAAACTATA 62190 36 100.0 30 .................................... TTATGTAGTTATAGATAATTACATAAGAGA 62256 36 100.0 30 .................................... GAAGAAGATTTAATTGATATAAAATGTTTA 62322 36 100.0 30 .................................... TTAGGAAAAGTAGCAGATAATAATTTTTAT 62388 36 100.0 30 .................................... AAAATATCAGACGTAATGGACTTATCAGAA 62454 36 100.0 30 .................................... TTTTCTACTGAATTTAATATAAGAAACTTT 62520 36 100.0 30 .................................... TTACAAGGGAAATATAACAAGGCAAAAGTA 62586 36 100.0 30 .................................... AAAAAAGAACCTCAAACAACTGATACAACT 62652 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : TTCCTTGTTTTTAAAAAAAGTATTATACATTTTAAATTCTTCTTTTAATGAAGCATCCATAACCTTTAATTCTCTCATAATTACAGTTGCTCTATCAGTAGAAAATTCCTCACTATAACAAAAAATATCATAGAGCCAATCTTCAGAAGGTATTGGCTTTTCCATATTTGAATACACAAGTATATTACTTATTGTATCTTCTTTTTCTATATGATATTTAGCCCAAAAAGCATTTTTATCTGTTAACTTAATAATTTTAACATTTTCTATATCAAACTCATCTATATCTTGAGCGAAATCTTCATTACTGTCATACCAAAAAACAATATGACGCTTCTTTCCATCACCTAATGGCTTTGAAAATATCTGTTTAAGAAAATTTGTTATTTCATGTAGATTCATTAAATCACCTCTTACTTAATATGTACTATTATAACAAAAAAACAACTACTTGTTATAATAACACCCTATTAGCTATTTATTATTTTTAAATTATATTT # Right flank : TATTAGTCATGAAAGCCGTTGGAATACAGTGATTTTAACGGCTTTCATGACTTTAAAAAACATTTAATTGACTTGAATTTATATTCTTTTCTTCCGGTTTTGGTGATCCTACTAAAAACTTCATTTCACAATATTGCTTTTCAGTAATTTGTAAATATCTAACCGAACCTTTAGGTGGTAAATTTCTTTTCAATCTTATAATATGTTTATTAGCTCCATCAATTCCATTACATATCCTCGAATACACTGAATACTGAATCATTATATATCCATCATTTAATAAGAATCTTCTAAAATTCTGATACTCTTTTCTATCTTCTTTTTTTACAACAGGCAAATCAAAAAATACTAGTAATCTCATAAATCTTCTACTCATAATAATGATACTCTAATGGTTTTATTATAGGCAATTTTAATAGTCGGAAATCTTTTTTACTACATGCTGTTGTATATGAAGATATCATTTTATCAATTGCATTTAAAATAGAATGACTTTTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //