Array 1 165104-163000 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVZV01000003.1 Actinocorallia populi strain A251 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165103 29 100.0 32 ............................. TGTTGAACGACCCTGAGGCCACGCAGCTGCAG 165042 29 96.6 32 ............................C ATCGACGCCAGCGACATCGGCTGGGTCCAGGC 164981 29 96.6 32 ............................C GTGAACATCGGCGGGATCACGATCAAGCGGGA 164920 29 100.0 32 ............................. TGGCTGAGCGGACCGTCGAGGCCGGGGCGTCC 164859 29 100.0 32 ............................. GGTTACGAGGTCGGGGGCGGGGCCTTGAGCAG 164798 29 100.0 32 ............................. TCCAGGCGACATTACGCCCGTTGCGGCCGATC 164737 29 96.6 32 ............................T TCATGGGGCCAAGCCAAGAAAAGGGGCGATTA 164676 29 100.0 32 ............................. TACCTGGGCGGGCGCGCGGCCCGAGCTGAGAA 164615 29 96.6 32 ............................T CCCACGGGCGGACCCATCGGAAGGCGCCTTCG 164554 29 100.0 32 ............................. CGGCCAGCTCAGCCCCGGTGCCGCTGGTCTCC 164493 29 96.6 32 ............................C TGCTCACCGCCTACGCGATGGATCCTGAACGC 164432 29 100.0 32 ............................. AAGCCGGCGCCGAAGGTCGCGGGGATCGGCGC 164371 29 100.0 32 ............................. AACTGCAGCGACTCATCGACGAACAGGCAGGT 164310 29 100.0 32 ............................. CGGTTCTCGTTCATCGTTCGGTCCTCTTCTTG 164249 29 100.0 32 ............................. GGCGCACCGATGCCCCAGCAGCTCACCGACGA 164188 29 96.6 32 ............................C GATTGTGTAGGCCCCCGGCACCTACAGAACCC 164127 29 100.0 33 ............................. GTGTCTCCTACTGGTCCGGGTCGGGGAAGAGCG 164065 29 100.0 32 ............................. CTGGAGGTCATCGCCGCCGAGGTCGCCGAGTT 164004 29 96.6 32 ............................T CCGACCAGGCTGGCCAGGGCGCCGAGGGAGAC 163943 29 96.6 32 ............................C GAGTTGTAGCTCTCGATCTCGCCGAGCACGTT 163882 29 96.6 32 ............................T CTGTTCGTGGAGCGCTCGAGCTGGGCGTGACC 163821 29 100.0 32 ............................. AAGGCCGGGCTTCAGCGCTACGGCCGGTACCT 163760 29 100.0 32 ............................. ATGATGGAGCTGGTCGCCCAGCTCTCCCCCGC 163699 29 100.0 32 ............................. CACGCCCTCTGATCCCGACACCAAGGAGAGAC 163638 29 96.6 32 ............................C TCATGGATGTCCGTCCGCTGGGTGGGGCCGCT 163577 29 96.6 32 ............................C GCGGGCTACGAGATCGACGGCGAGACCGTCGA 163516 29 96.6 32 ............................C GGGCGCGCCAGTACGCGCGCGGCATCGTGGCG 163455 29 96.6 32 ............................C CGTGCCGGGTGGTGGTGTCGACCGTGCCGTCG 163394 29 96.6 32 ............................C ATCTTCGGGGCGGCGGGCGCCGAGGGCGGCGG 163333 29 93.1 32 ......T.....................C TCCCCGAACTCCAGCAGCCGGTGGATTCTGGC 163272 29 96.6 32 ............................A GAGGCGCAGCTCGCCTATGAGCAGGCGGTGCA 163211 29 96.6 32 ............................C CGGAACTTCTTCCTCAACAGCGCGGAGCCAGG 163150 29 93.1 32 ..T..T....................... GTCGAGCTTGACAAGCAGAACCAGCCCCAGGG 163089 29 96.6 32 ............................C CTGTCCAACGGCGAGTACGTGCTGCCCGCCAA 163028 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.9 32 GTCGGCCCCGCACGCGCGGGGATGTTCCG # Left flank : GTTGACTTCGATCATCCAGCGGGTGAGGTGGCCGCGGAGGCCTTCGGGGGCGGCGATGAGGACGATGACGGTCATGGGGCGTCGAACTCGGGGCCGATGATCGCCATGTGATGGTCTCCCATGGTGGGTTGGATGAAGGCTGTACTGAGGTTGACGGCCATGTCCGATTCGTCGGCCCAATTGACGCTGCCGACGCGTTCGTCCCATAGCTCGTTGGTGTCTTCTGGCGGTTCGGCCCCTTCAGTGGGGAGGAGGGGAGCGTTCCTCTTCTCCGCGGATTTCCCCTACAAGACCCCAATCTCCGCACGACATCCGCATCCCATCCCGTCCATACCTGACCCGCACTCATCCGACCTCCTCTCCCAGGCGCCGCTCCACCTATCCTCAGCTGGTGACAGAATGAGCTCACCAGCCTTTTGTCCGCCCGCCCAACGCGCCTCGACCGAATCCACCTGAATAAAAATCGCTCCCCTCGCCTGCAAACCCCCAGGTCAGCAAGT # Right flank : TGTTGCTGGACGGCGGCCTGGCCGTCGGTGAAGTCAACCTTGCGCACGCGGGATGCTTTCCCTCAGATCATCTGTAGAGATGCGCGGTGAGGTTGGCCCTACACGCATGGGGTGCCATATCTGAACCTGCCGGAAACGGGTCCTCTTATCGAGAGCGGGCCCGAGTGCGTGCGAGGGCGTCGAGGGCGGTGTCGTCGGCGTCGGGGAGGGTGTGGAGGTACTTTTCGGTGGTGGAGATGCTGCCGTGTCCGAGGCGTTCTTTGACGACTTGGAGGTCGGCGCCGCCTGCGAGGAGCCAGGAGGCGTGGGCGTGGCGGAGGTCGTGCATTTTGACCTTGAACTCCAGGCCTGAGGCGGTGAGGGCGGGGCGCCAGATGTGGTCGCGGAACCATCGGCGGGGGATGTGTCCGTCGGTGTTCCAGGAGCGTAGGTTGCGTGGGTTGTCTTTGCCGGTGCTGCGGCGCTGGGCGCGGTAGGTGGCGTAGGCGCTTCTGCAGTGT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 172709-171338 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVZV01000003.1 Actinocorallia populi strain A251 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 172708 29 100.0 32 ............................. TTCTTCCGCCATGTCCTGGAGCTGCCGCTGTG 172647 29 96.6 32 ............................G CCGCGCCCGCCGGTGGAGGTCGACGCGCTGAT 172586 29 100.0 32 ............................. TGTCCCAGGAGGCGCTGACGGTCCTGGAGCAT 172525 29 96.6 32 ............................T GTACGGGTGACCCGTACGTATGTCAAGGAGAC 172464 29 96.6 32 ............................G GACAGCAAGTCCCTGCTGACGGAGATCAACCC 172403 29 96.6 32 ............................T GTACGGATGACCCGTACGTATGTCAAGGAGAC 172342 29 96.6 32 ............................G ACCTGTCCGGACGGCTCGAGCGGCTCGAGCAG 172281 29 96.6 32 ............................G CCCTGGTGATGATCTCCAGAGACGCCAACTGT 172220 29 100.0 32 ............................. GAGACCCCCTGCCCCACCTGCAAGACCCGGGG 172159 29 100.0 32 ............................. GGGCGCCAACCACCGGTTGACGATCCAACAGT 172098 29 100.0 32 ............................. AGCTCACCCGACAGCTCGTAGACACCGCGCAC 172037 29 96.6 32 ............................T ATGTCGATCGTCACGCGGTAGCTGCTGGGATC 171976 29 100.0 32 ............................. CAGATGCACATCTCCTGGCCGCTGATCATGCA 171915 29 96.6 32 ............................G AGTCGAGGGTGAACTTGGCCATGGGGTGCGGA 171854 29 96.6 32 ............................G CTGACGTCATCCCGACCAGCATCCGAACCAAC 171793 29 100.0 32 ............................. GGCACGGACTACGTGGGCTTCGCGCTGGACGG 171732 29 100.0 32 ............................. TCACCCACCTTGGCGAGCTGCTCGTCCGTGGC 171671 29 96.6 32 ...........G................. CGCATCGCGGCGTTCCTCAGCGCGTCCCCGAT 171610 29 96.6 32 ............................G GGCGGTGAGATGGCGGATACCTCCCCGGCGGC 171549 29 100.0 32 ............................. TACCAGGTTCAGTTCGACACGCACGTCACGAA 171488 29 93.1 32 ..............T.............G CGCTACGACGGCCCGATCCCGAGAGGTCACGA 171427 29 93.1 32 ...........G................G CCGTACTGGCCGTACCGCCTCACCGCTTTGGC 171366 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 97.6 32 GTCGGCCCCGCACACGCGGGGATGCTCCC # Left flank : CATCGGTGGGTCTGAGCTCCGACCCAGGTAAGCCCGCTGCTCCGTACCCGCTCACCGTTTTCCTCGTCGATCCGCTGGAACGCCGGCGTAGCCTTCCCACAGTCATGGATCCCGCACAACCACGCGAAGAACCGGCGCCCCCGTCCCGTTTCCCCAGCGATCTCGTCCAACATCCCCTTGGTGGACTCGGCCAGATAGCGATCCCATATCAGCTCAGCGACCGCGGCGGTATCCAGAAGATGCGCCAGTAGGAGGTTCGTCCGTCCGCCGCCCTTCTCCGCGGACTTCCCCCACAAGACCCCCAATCTTCGCAGGACATCTGCATCCCATCGCGCCCAAGCCTGACCCGCGCTCATTCGACCCCTCTCCGCCGCCAAGCTAGCCTCAGCCGGTGACAAAATGAGCTTGCCGACCTTTCGTCTGTTCGCCTAACGCGCCTCAACCGAATCCACCTGAATAAAAATCGCTCTCCCCGCCTGCGAACCTCCAGGTCAGCAAGT # Right flank : GTCTCCCTACGAGCCCCGGGAAAGGAAGGTAAGGGAGGGGTGCCGGGCCGGGGACGGGAGTTTCCGGATCGAGATCCTGATCGGTATGTTCCTAACAGGGTGGTGCTATCAGCGCTGCGGTGGCCTTCTGTGTTGTGCGAGTTGGGCGGGAGATGGGGTCGCTGGATTCGTCTGCTTTCCACGCGTGTCGATGAGGTCGTTAAGCACTGCCCGCACGACTGGCCAGCAGAGCTCGACGGTGTCTCGGTCAGGGGGCGGGCCTGGCATGCGCATCTGGGCTCGGGGGTGGACGAGATTCCGGTACTGGCGAAGGGCCGCGCAGGGGTACTTGGTCACGTCGTTGCCGATCCAGCCGTTCCTTTGAGCGAGAGTCAGCAATTCGTCGAGGGATATCTTGTTCAGGTCTGCTCGGGGTGGCACGCTGACAGGCCTGGTCATCATGGCATCGATCAGAATGCCTTCGATGAGACTGCCGAGCATGATGATCGCCGCGACGTGCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 182553-183557 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVZV01000003.1 Actinocorallia populi strain A251 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182553 29 100.0 32 ............................. GTGACCGCCTATCTGCACGGCCACCTCTACAG 182614 29 96.6 32 ............................T GAGGGCCTCATGGCCGTAGAGAGTGAGCGGCC 182675 29 100.0 32 ............................. TCTGACGCACCCTATCCGCCTAACATGCCCTT 182736 29 96.6 32 ............................T CGTCGGCCCGTGCGTCACCCCGGCCGTGACCA 182797 29 96.6 32 ............................A CCGGACATGCGGGTGGCCCACCTGCAGCGCAC 182858 29 96.6 32 ............................T GCTCGGTGCTGGTCACGGACTTCGCCTCGCAC 182919 29 96.6 32 ............................T TCCACGGTCATGGCGGCCAGCGTGGCACGCGG 182980 29 96.6 32 ............................C TACTGCGACTGGTTCGCCGGACCCGGCCGCAC 183041 29 93.1 32 ...................A........C CGGCAGGTGGCCGACTCCGAGCGCGCTCTGGC 183102 29 96.6 32 ....................A........ GTCACGCAGGACGCGCTCGACTTCGCGGCGTT 183163 29 100.0 32 ............................. TCGAACGCCCCGTACTCGAGGCCGAAGGCGCG 183224 29 96.6 32 ............................T CCCACTTCCATCGCTCGCTGCAGGTCGGCGAT 183285 29 96.6 32 ........T.................... GCCGCACCCCTGATCAGCGTCTTCGGCCGCGA 183346 29 100.0 32 ............................. GACGGCGTCACGATGTGGACGGTGCCGCTGAT 183407 29 100.0 32 ............................. AACCGGGTCGCGTCCGCGCAGCTCGGTGTCCA 183468 29 93.1 32 ....................A.......C TCTTCACCGGGTGCCCTCCCGCCGGACCTCTC 183529 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.4 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : CTCCGGCGGCGTCAACTGGGCCAGTGAATCGGACCTGGCCATCAACCTCGGCGCGAACCTCATTCAGCCCACCATGGGAGACGACCACATGGCGATCATCGGCCCCGAGTTCGACGCCCCATGACCGTCATCGTCCTCATCGCCGCCCCCGAAGGCCTCCGCGGCCACCTCACCCGCTGGATGATCGAAGTCAACGCCGGCGTGTTCGTCGGCAACCCCAGCCACCGCATCCGCGACCGCCTCTGGAACCTCCTCGCCACCCGCATCGGCGACGGCCAAGCCATCCTCGTCGAACCCTCCACCAACGAACAAGGCTGGTCCGTCCGCACCGCCGGCAAAGACCGCTGGCACCCCACCGACTTCGACGGCCTCATCCTCTCCGCCCGCCGCCGTGCCGCCTCCCGTCCCGCCCTCTGATGCAGGCCACCTCTTCCCAGTCCAAAGAATTCCTACTGAACAAAAACCAGCCGTATCGCTGAAGAAAACCCAGGTCAGCAAGT # Right flank : GCTCGCTGGGACAACAAGGTTGGCCAGGTCGGGTCAGCCCTGCACATGTATGCGAGGAAAGGTTCCTGCTGAGAACGCCCGCTCGCCAGTAGGTTGAAGAGTCAGTCCTTTACCGCTGAGATGGTCCCTCTCCGACAGAACACTTCACTATGGGTATGGTTTGTTTTCCGCGTACACAAGGAGCTCCTCTGCCTATTGATCTAGACAGATCCGACGGTGAGCGTTTCTGGTTTGCTACGTACTCTTGGATGCGGTCTCAACTTCTAGAAGACGAAGGAGACTCTGGGTGGAGACTCGGTAGGAGTAGCCAATTTTCAGAACTCGGCATGGGAATTTTCCTTCCTTGGCCAGTTGATAGGCCTTGGTTCGGGAGAGGCCGAGGATTTTGGCGGCTGTGGGGATGTCGAGCGTGGGTGGTAGGTTTCCGAGATTGTTGATGCTGTACCTGGGCAGGATCGAGCCTCCGGGTCGTCGTGTGGCGAGCGTCAGGACTACTTGTG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //