Array 1 902-404 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZE01000055.1 Streptococcus halichoeri strain P380 NODE_55_length_4830_cov_129.147140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 901 36 100.0 30 .................................... TAATTAATAAATGATATATTTACAAGGCGA 835 36 100.0 30 .................................... AGGTTTTGTATCCCATCCTGCAAGCCATGC 769 36 100.0 30 .................................... GAACATGCTGAGAAAGTTCGAGTAAAACGT 703 36 100.0 30 .................................... CTTTTGCGGCCTGATTAAACCACGCTTGCT 637 36 100.0 30 .................................... TAGTTCCCTTGAGCTGGAATAAGAAAGTGC 571 36 100.0 30 .................................... TACATGTACCGAAACGAGGATAAGCTGCTC 505 36 100.0 30 .................................... TGGTTAATGTTTGACAAGAAAATGAATGCT 439 36 86.1 0 .............................TTG..CG | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.3 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AAACTAGCAACAGACCAAACGTTAATCTCTCGAAAAGTCCGTTGAAGCATCCCAGTAAGCAGTAAAAACTGAGAATATGAGAGCATATAAATTGCTTTGGGGATCGATACAGTGTCTTAGACCGTTGTCCAAAGCAAGTATTTGTCATCCCCCGAATAGACAGAAAAAAAGAGTCACGCTATCCAATCGTTCATATCTCTCCTGATAAATCGATTGCTGTCATCAATCAAGCCAAGCATTTGGAATACAAAACATCAGCCAAATGCTAGCATAGCAGCTGAGGAACCAGAGATTAGGGGTTTAATAAAAATTTTTGAACCTAAACTGAAAAGGTACTGACGATTAATCAGCCGACAACCATGATAGTTAGCCTTCTTAACGCATTGATTTCGCAAGAATTTTGCCGTATAATAGTGCTATGAAAGGACGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAACTTGTGGACAAACCCTGTCTACGAG # Right flank : GAAGTGTTAGCTCCACCTTTCCCCCTTTTGATTGCTAAAACTAAAAATAAATTTGAAAACCTCTTGACAAAGCGCCGGAAAGTGAGTATACTAAGAAAGTTGTCAGCTGATTAGCGTAAGTGTCAATAAAAAGTAAAAAAAGTTATTGACAAAGCCTTAAGAAGCTGATAGAATAAAGAAGTTGCCTCGTAAGAGGGGAAAGACCTTTGAGAACTGAATAAGACGAACCAAAAAGTGAAGAGGGGTTTATAAGCAGTATAGACTCCGTCAAAGCAAGAATAAATCTGTCAGCGACAGAAAAGAACGAGTAAGTTCAAACTAAATGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGCCTAATACATGCAAGTAGAACGCTTTGGACTGGTGCTTGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 451-150 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZE01000062.1 Streptococcus halichoeri strain P380 NODE_62_length_2775_cov_69.954305, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 450 36 100.0 30 .................................... AATTGCTCTGTTTAAAGGAATGACAAATTA 384 36 100.0 30 .................................... TAAATTAAACGACATGATGGCAGGAATTTA 318 36 100.0 30 .................................... GTGGTTGACAGTGATAATGCCATAATCGCA 252 36 97.2 31 ............................C....... CTTTCATTAAATTCTCGTAATCTAAATTTCT 185 36 97.2 0 ............................C....... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 98.9 30 GTTTTAGAGCTATGCTGTTTTGAATGGTTCCAAAAC # Left flank : CAAATGATGAGAATATCTAAGTTTAGATTTACAATCCAGTTAATGGCATAGCATAAAACAGTGACATGTACCCTTTTTACTGGACTAATCCAGTGAAAGGTTTTTTGTATGAAATATAATTATAAGTTTAAGTTAAATGCAGTAGAAATGTATCGATTAGGACAGTGGATTGATACTCCAGATCGTACTGGGGTCTTTTCTATGGTTACTACAGCCAAAATCGCTGCCGCAGAGAGAATAAAACAAAGGTGGATTCTCAAAATCAGTTCGCCTAGAAATTAATCTGAGAAAGTTGAAAAGCAGCGCAGAATTTTTGCTTACTACAGCAACTAACCCCAATATTGTTTGAGACTTAATCGGCCGCCAAAAACTTCTTAAGCCAATTGATTTCATAAGGTTTTTGCCGTATAATAGTGCTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : CGAAACGGCTAAACATAAAGAAGGTAAGCGTCCAATAACAGGGTATCTACCGTGATTCTCAATCCTCCAGTATACTGTTAGTAAAACTAGTCTATCGGAGGATAATTTAAATGTCACACCCTATTGTTCCTTTGGAAGTTCCCCAATCTC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 28408-28838 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZE01000007.1 Streptococcus halichoeri strain P380 NODE_7_length_83134_cov_112.920224, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 28408 36 100.0 30 .................................... CAAAGCTAATTCAGCATTACCGAATTTTGT 28474 36 100.0 30 .................................... GTTAAAGAAGATTGGAACAAAAGATTAGAT 28540 36 100.0 30 .................................... TGATGTTGGCTAATCTCGCCATAGCATTAG 28606 36 100.0 29 .................................... GTCGAAAGAGATTTTATTGTAATGGTTTT 28671 36 100.0 30 .................................... AGGATTAGCGTCGTCGGAGTATTCTCGTTT 28737 36 94.4 30 .T............C..................... GAATGAAGCTAAATTAGCAATGGCCGATAT 28803 36 94.4 0 .T............C..................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.4 30 GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : CTAGCAGCAACTATAACAGAATTAATCGCCTTTGAATGTCTAGAGAACGAATTGGACTTGGAATATGATGAAATTACTATCTTGGAACTTATAAAGGCTTTAGGGGTTAAGGTGGAAACACAGAGTGATACTATTTTTGACAAGTGTTTGGAGATTTTACAAGTTTTCAAATACCTGTCTAAAAAGAAACTCTTAATTTTTGTGAATTGCGGCTCCTATCTTACCAAAGAAGAACTCTTGAAGCTGAGAGAGTATATTGAATTATCTCAGCAAACGGTCCTCTTATTAGAGCCAAGAAGTTTGTACGATATTCCGCAATATGTTCTAGATGAAGACTATTTTTTGATAGCAGAAAACATGCCATAGTCTAGCTTCTAAAAACCTTGATTTCATAAGGCTTTTGCCGTATAATAGTGCTATGAAAGGGCGATTCAAAACTGAAGTCCAGCTAAGACGAGTAGCGCGATTACGAAAAATTGTGGACAAACCCTGTCTACGAG # Right flank : CGAGTGGTAAAAAAATGTCGCATCATGTGAGGGGTAACACGAAAACCAAGAATTTTGTACGACAAATACCTAGCACTTCACAAAAAATAAGACAAAGCTATTTATACAGAATTATGTATGTCTGAGAGTTTTTATTATGATACGCTTGATATTGCACTATTAGCTTTTACAGAGCTGTACAGGGAGAGTTCTTTGATTGTTGAACGAGGAGTTTTTAGCTGGTTTATACAGTAAGTGAGCAGTTTATACGTGAAATTGTATGCTATTATAGTACTATCAAAATAGCAAGAAGAGATAACTGTTTTTTCAATTGATTATATTTAGTCGCAAACTTTAACGACGATCAAACTTGTTATTTTATGGGGACGGTCCCCCGGCGGGGACCATTTATCCGTCATGGCTCAAAACGAGGAATGCTAATGGACGCATCAAGAACCGTCGCATGTGCAGAACAGCAGACTGATAATCTGAGGTGCTAGTTCGAATCCGGTTGACGAGGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //