Array 1 256393-257763 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGAR01000045.1 Escherichia coli strain KS-P038 sequence45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 256393 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 256454 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 256515 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 256576 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 256637 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 256698 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 256759 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 256820 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 256881 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 256942 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 257003 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 257064 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 257125 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 257186 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 257247 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 257308 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 257369 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 257430 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 257491 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 257552 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 257613 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 257674 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 257735 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 275842-276784 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGAR01000045.1 Escherichia coli strain KS-P038 sequence45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 275842 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 275903 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 275964 29 96.6 32 ..A.......................... CCGCCGTCGAGTGTAATACCCTGATCCATCGC 276025 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 276086 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 276147 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 276208 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 276269 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 276330 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 276391 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 276452 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 276512 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 276573 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 276634 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 276695 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 276756 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAGATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //