Array 1 20290-19896 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAC01000056.1 Propionibacterium freudenreichii strain CIRM-BIA 527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 20289 36 100.0 36 .................................... ATTGGGGAGGCAGCACCACCACCGCCCCACACGGCA 20217 36 100.0 35 .................................... TATCCGCGCCGACACCGGAAGACGTAGCTGTGGTT 20146 36 100.0 36 .................................... GTCATCATCGGCTGGCCGTTGCTGAACGTTCTCGGT 20074 36 97.2 35 ....A............................... TGCGACACCGATTCGCTGCACCTGATCACCGACGA 20003 36 91.7 36 .......................AA......A.... AGCCCGATCAGATCGCAGAGGACCGCACCCTACGCA 19931 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 97.7 36 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : CGTGCGCGAGCAACCGCGTATCAGTCCCGCGAGAAAGCCCCTGGCTGCCACAACCCCGACACCACGGATCCGGCTCCGCAACCCGGCACTCGATCACCGCCCGGTCCGACTCAAGACACTGCCCCACCGCGACGAGACCGAGCTCGTCCAGTCGGCAGAACACGGTCAGATCAGGGGTCGCAAAGGTAGCGTGGAGCACGTCGAGGTCTTCCGGCAGATGGTCAGTGTGAGAACTTCCATCATCGGGAGACCTCGACCCTCACCCCCGCAACGACGCGCTCAACCACCTACCCCCTCAACTGCGAAGAGCCACTTAACCAGACCAGCCGCCAATTCCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTGGAGGGGCCCTTCATTGAGGCCGCGATGTCGCTCACATTGACATTGGCACATGGA # Right flank : TCGTTGAACATTCTAGAATTGGCAATCCCGACATGACATTGCGGCTCTTCACAGATGACGGTGTAGTTCGGTTCTGAATCCTCCGGTGTCCAGTAGGGCGCGGATGACGTAGTGGGCAAGGTTGCGGAAGCCCAGCGCGGTGCCGCGGAGGTGCTCGAGTCGGCCGTTGATCGCCTCGGTCGGGCCGTTGCTGGTGCCGGGGTGGTCGAAATAGGCCAGCACATCGAGGGCTCGGCGTTTCAGTGTCCGGCCGAGGGTGATGAGTTCTTTGAGCTGCTTGGGCACCCCGTCGGTGAGGTCGTCGATCACTGCCTGCAGTTCTCGCTTCCCGGCAGCGCGGTCGGGATGGCGGTAGGCGGCGACGATCCGCTGGTAGACGTTCCAGGTCGCCTCGACCTCGACGTGCTCATCACTGGCGAACACGGCCTTCAGGCGGGTGATCTGCTTGTCGGTGGGCAGGTCAGCGCCGGTGTGCAGCACGCGGCGGATCCCGTAGAGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 10248-10862 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAC01000061.1 Propionibacterium freudenreichii strain CIRM-BIA 527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================================ ================== 10248 27 100.0 42 ........................... NNNNNNNNNNGAGCCGGATTCTGATCGAGGTGGCTTTCCGAA 10317 27 100.0 45 ........................... CATTGAGGCTCGCAGGAGGGCAATCGGCTCGACCCTGATCATCTG 10389 27 100.0 44 ........................... CATTGAGGCCTATTGAAGAATGGATTTTCATACACAAACGCCAG 10460 27 100.0 45 ........................... CATTGAGGCTCGCAGGAGGGCAATCGGCTCGACCCTGATCATCTG 10532 27 100.0 45 ........................... CATTGAGGCTACCGACACCCTTGGCGGGATGCAGCGAATGGCAAT 10604 27 100.0 60 ........................... CNNNNNNNNNNNNNNNNNNNNNNGTCAAGTTCCGCTAGGTTCGGCTTTGTCTGGGGGCGT 10691 27 100.0 45 ........................... CATTGAGGCCCGGAAAGAAGACCTGGCTTGTCTACGTCGATTCGG 10763 27 100.0 46 ........................... CATTGAGGCTGTAGAAATCGACAAAAGTTTCAACAAAATTCTTGAA 10836 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================================================ ================== 9 27 100.0 47 ATTGCCCCTCCTTCTGGAGGGGCCCTT # Left flank : ATATAGGAATGACGGTCAGATGAGCCGACGAGATTCCCATTGCTTTCTGATCGCCTACGACGTGCCCGATGACCGTCGTCGCACCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCGGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCC # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCATCCCACGGGCCCTCACCCTGAGCGCGTGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCACACTAAAGTTCTAGGGAGAAACACGATGAGTAATGATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNATGCGCAAGACAACCAGAGCCATCGCGGCTGCCATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTTGTCGGCTTCCACGGTGGAGACGGACTGCACAGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTTGATATCTTGAATCTCAAGCTCAGACCCAATATCAAGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAAGATCAAGATTCCTGACATTACTGGTCCGGATTATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNACGCTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 10962-11491 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAC01000061.1 Propionibacterium freudenreichii strain CIRM-BIA 527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =============================================== ================== 10962 27 100.0 45 ........................... CATTGAGGCACACTAAAGTTCTAGGGAGAAACACGATGAGTAATG 11034 27 100.0 43 ........................... NNNNNNNNNNATGCGCAAGACAACCAGAGCCATCGCGGCTGCC 11104 27 100.0 43 ........................... CATTGAGGCTTGTCGGCTTCCACGGTGGAGACGGACTGCACAG 11174 27 100.0 47 ........................... CATTGAGGCTTGATATCTTGAATCTCAAGCTCAGACCCAATATCAAG 11248 27 100.0 43 ........................... CATTGAGGCAAGATCAAGATTCCTGACATTACTGGTCCGGATT 11318 27 100.0 46 ........................... NNNNNNNNNNACGCTCGCGCCCGGTACGGGCGACGGGATTCTCACC 11391 27 100.0 47 ........................... CATTGAGGCTTTAATCACATGGGGCGGATATAATCCGACCTATGACC 11465 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== =============================================== ================== 8 27 100.0 45 ATTGCCCCTCCTTCTGGAGGGGCCCTT # Left flank : TGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTCGCAGGAGGGCAATCGGCTCGACCCTGATCATCTGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTACCGACACCCTTGGCGGGATGCAGCGAATGGCAATATTGCCCCTCCTTCTGGAGGGGCCCTTCNNNNNNNNNNNNNNNNNNNNNNGTCAAGTTCCGCTAGGTTCGGCTTTGTCTGGGGGCGTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCCGGAAAGAAGACCTGGCTTGTCTACGTCGATTCGGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCTGTAGAAATCGACAAAAGTTTCAACAAAATTCTTGAAATTGCCCCTCCTTCTGGAGGGGCCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCATCCCACGGGCCCTCACCCTGAGCGCGTG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [15.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 157-633 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAC01000060.1 Propionibacterium freudenreichii strain CIRM-BIA 527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 157 36 100.0 35 .................................... CCTGCACCGCCGCTCACCTCACGCCATTTCGACAG G [172] 229 36 100.0 39 .................................... GCTTCCGTTGGTGAACACCATTTTGGTTTGATTCCACTC 304 36 97.2 38 ......................A............. TCGTCGTGGACGCCGGGCACGTCCATCTATCTGGCAAA 378 36 100.0 39 .................................... ATGTCGGCGCGCTTCGGCCTGGTGCTGCCTCTGCGGGTG G [393] 454 36 97.2 37 ..............................C..... TCGGCATGATGCCAGCGCCGATTATCGTGAGCGTATT 527 36 97.2 35 ...................................A GCGAAAGAGCGATCATTCCGGGTATGGATCAAACC 598 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 98.8 37 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : TCCTTCTGGAGGGGCCCTTCATTGAGGCAGGCTTCAGGTCCGGCCTCGGCCCACAGGATCGGATTGCCCCTCCTTCTGGAGGGGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGCCTGATCGAGCTTATTTATCGAGCAGGTGCCA # Right flank : CTTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATGCCGAGACGTGCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGCAAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 335-803 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAC01000062.1 Propionibacterium freudenreichii strain CIRM-BIA 527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 335 36 100.0 35 .................................... ACCTGGACAGTGCGGGTGATCTTGCCACCCAGCTT 406 36 100.0 35 .................................... ACCGTCCCCGACGATGGCATCTACAGCCTCTATGC 477 36 100.0 39 .................................... GTCCGACAAGGATGACGACATCGAGTTCTTCCAGGATGG 552 36 100.0 37 .................................... CATGCTGGAGTACGCTCGAATTCTCTTCCCCGGTCGC 625 36 100.0 34 .................................... CGACCTCACTCGACGCCATGCACACACCCCACAG 695 36 77.8 37 ............................NNNNNNNN NNGCGCCTGTGGTGACACCGCGATCACGAGCCAGCGA 768 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 96.8 36 GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Left flank : GAAGGGCCCCTCCAGAAGGAGGGGCAATACCACCGGCATGGCCGCCGACGGCGTGGACCGGCTGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNCCCGCAACCGCTCGACCTCACTCGACGCCATGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGCGAATGTCAGGGATCGGGTCTTGAACGCCACCGATGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGCCTGGGGGTCGCCCCCGCGCATGAAGTGG # Right flank : TATGCGCGCATTGGCGCAGAACTTGAAATGCTTGGACGTGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACGCTTACTCCTGGTTTCCACGGGAACCTCGCGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATAACGGCAAGGAGCAGATCCTCGCCAAGAACTTGGCGCAGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCACGATCGCCGGAATGGTCACCGCTTCGGATGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTTGCTTACTCAGGGCTTGTCTCTTTTGGTCGTTTTGCGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNN # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 1518-1688 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAC01000062.1 Propionibacterium freudenreichii strain CIRM-BIA 527, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1518 29 100.0 41 ............................. GGGCAATCGTTCTCGTGCTGAGCTACGGCATACGGGGTGTC 1588 29 100.0 43 ............................. NNNNNNNNNNTTCGAGGATGCCGGCGAGGAAGCCGGTAGGAGT 1660 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= =========================================== ================== 3 29 98.9 42 GCCTCAATGAAGGGCCCCTCCAGAAGGAG # Left flank : GGGGCAATAACGGCAAGGAGCAGATCCTCGCCAAGAACTTGGCGCAGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCACGATCGCCGGAATGGTCACCGCTTCGGATGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATTTTGCTTACTCAGGGCTTGTCTCTTTTGGTCGTTTTGCGCCTCAATGAAGGGCCCCTCCAGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGCGCTGCTTGGGACGCCGCTCAGATCGCCGCTGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATAGTCGGGTGTAATCATTGACCTCCGCACCCGGCAAGCAGCCTCAATGAAGGGCCCCTCCAGAAGGNNNNNNNNNNCCATGTGTGAGCGAACCCACGCATCCTGACT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGAACTGGATTTTTACCAATTGCTAGATGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGCGATCTCGGCGCTGGTGGGGGCGTTCTCGATTGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGCGAGCCAATCGACATCGCCCGGAAGGTTAGCGAGAAAGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATGCGATCTCGGCGCTGGTGGGGGCGTTCTCGATTGCGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCGGCATCATGTGATCACCCGACCCATGACCTGCTCCCACGGCCTCAATGAAGGGCCCCTCCAGAAGGAGGGGCAATCGTTACTCATTGTGTTTCTCCTAGAACTTTAACGGGGTCTTCTCAGATGAGGGTGTAGGTCG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCCCCTCCAGAAGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 2116-1788 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDAC01000062.1 Propionibacterium freudenreichii strain CIRM-BIA 527, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2115 36 100.0 40 .................................... CGTGGGAGCAGGTCATGGGTCGGGTGATCACATGATGCCG 2039 36 100.0 35 .................................... GCAATCGAGAACGCCCCCACCAGCGCCGAGATCGC 1968 36 100.0 38 .................................... TTTCTCGCTAACCTTCCGGGCGATGTCGATTGGCTCGC 1894 36 100.0 35 .................................... GCAATCGAGAACGCCCCCACCAGCGCCGAGATCGC 1823 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 100.0 37 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : CGACCTACACCCTCATCTGAGAAGACCCCGTTAAAGTTCTAGGAGAAACACAATGAGTAAC # Right flank : CATCTAGCAATTGGTAAAAATCCAGTTCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTTCTGGAGGGGCCCTTCATTGAGGCACTCCTACCGGCTTCCTCGCCGGCATCCTCGAANNNNNNNNNNCTCCTTCTGGAGGGGCCCTTCATTGAGGCGACACCCCGTATGCCGTAGCTCAGCACGAGAACGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAGTCAGGATGCGTGGGTTCGCTCACACATGGNNNNNNNNNNCCTTCTGGAGGGGCCCTTCATTGAGGCTGCTTGCCGGGTGCGGAGGTCAATGATTACACCCGACTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAGCGGCGATCTGAGCGGCGTCCCAAGCAGCGCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA //