Array 1 17644-15362 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHHH01000023.1 Streptococcus thermophilus strain St-9 NODE_23_length_30232_cov_3.21175_ID_6738, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 17643 36 100.0 30 .................................... GCTTGGATGATGAGATTATGCGTAAAGCCT 17577 36 100.0 29 .................................... CTTATCAACCCAATCTACAACATATTGTG 17512 36 100.0 30 .................................... AAAATCTGCAGTAGTGATGTCATCGTTATT 17446 36 100.0 30 .................................... TCGTGATAAAGAAAGTGTTAAACGCACACT 17380 36 100.0 30 .................................... ATTAGGGTGTTTTATAAGACCAACATTTTC 17314 36 100.0 31 .................................... ATGAACATGATGCAGAAAGATGGACTGATGG 17247 36 100.0 30 .................................... GTGGTGATGTGTTTGCAGCTAGCGAAATTT 17181 36 100.0 30 .................................... TTCGACTTTAACAACCTTGATTTTGAAATT 17115 36 100.0 31 .................................... TTGGCAGCTAGCTCACTAATCAAGCCTGCTA 17048 36 100.0 30 .................................... CTCGTTAGAGAAACTTAAAGAGCTGTTGCT 16982 36 100.0 30 .................................... TACAGTAACAGTTACTTTTACTCGTAACCG 16916 36 100.0 30 .................................... AAATGTTCCTTTACCATTGTTACCGTCCCC 16850 36 100.0 30 .................................... AAAAGCTAGAAGCACTTTCCAAGGTGGCAC 16784 36 100.0 31 .................................... ACAGACTGGAATTTAAAATAAAGGTGGTGGT 16717 36 100.0 30 .................................... TTGGCAATATGCAGGAGTTGAAGGTAGTTA 16651 36 100.0 30 .................................... ATTTTACAAAGACAAAGAAAACAAAACAAC 16585 36 100.0 30 .................................... AGCTAGACATATCAGCACCCCATGACATTA 16519 36 100.0 30 .................................... GAATACAAGGCCAACATTGCCATGATTGAG 16453 36 100.0 30 .................................... TCTTTGCTTAGTTTGGTCGCAAGATAACTT 16387 36 100.0 30 .................................... ACTTGACTGATAATAAAGAATAAAGAGAAA 16321 36 100.0 30 .................................... AATAGTATCAAGGGTAAATCTACCAGTCAA 16255 36 100.0 30 .................................... GACAACTGTTACAATGTACAGATATTTTAT 16189 36 100.0 30 .................................... ATCTTCCCTAGAAATGAGTTTAGATCTTTA 16123 36 100.0 30 .................................... ATGCTTTCTTTACAGATTTTTCAATGCCGT 16057 36 100.0 30 .................................... ATGGCATAATCTTCAAACGCATACATACCA 15991 36 100.0 30 .................................... CTGAATTAGCAGAACCAAGAAGTATCTTAG 15925 36 100.0 30 .................................... CACAACACAAAAAGTTTTTGAGGTTGACAC 15859 36 100.0 30 .................................... TATTATCAACGCAAGCATTACAACAACTTC 15793 36 100.0 30 .................................... ATTCAGCCTTGAAAGTGTTCCTGATAAGTT 15727 36 100.0 30 .................................... GACGGCACAGCTGACTGTTCTGGTTCTATG 15661 36 100.0 30 .................................... AACTTTTAAAAGGTGCTGGACAACCTTACG 15595 36 100.0 30 .................................... TCTAGAGACCTCTTCGTGTTGTCACAACTT 15529 36 100.0 30 .................................... GATAAAGTAAGCTAACCATTAAGCGCAGTT 15463 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 15397 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATCTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCTGGCTTCAAATACTGGATAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1940-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHHH01000024.1 Streptococcus thermophilus strain St-9 NODE_24_length_30165_cov_3.14628_ID_6740, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1939 36 100.0 30 .................................... GAAATTACTTGGATATAAAGCAGACGGTAA 1873 36 100.0 30 .................................... GGCTTAAAAACCCAGAAAGTGGGCTATTAG 1807 36 100.0 30 .................................... ACGCAAGATTGTATACTGTGGAAATGGAAG 1741 36 100.0 30 .................................... AATATGATAAACTTATCCGCAAGAAGGGAG 1675 36 100.0 30 .................................... ATCGGTATGAAACTGCATTTTATAACGCAA 1609 36 100.0 30 .................................... TAAGGGACGTCAAGAACTAATGGAGATAGC 1543 36 100.0 30 .................................... TTGGTACTGCACCTCAAACGGTGAGTGCAT 1477 36 100.0 30 .................................... TAATCCTGACAGGAACGTCATTAGATACGT 1411 36 100.0 30 .................................... TCGTGGAGAAGACGCAGTAAATAATAAACT 1345 36 100.0 30 .................................... CTTTTAACGCGTTTATTCGCTAAACTGTTC 1279 36 100.0 30 .................................... ATTCATCAGTTAATTCATCTACTTTACTGT 1213 36 100.0 30 .................................... GTCTCCCGTGCCTATTTTAAAAACTAGAAA 1147 36 100.0 30 .................................... TGCACGAGTAGTGAAACTAGAAAATAATCT 1081 36 100.0 30 .................................... TAGTATTGTTATTTTCCAAAAAGAGAGGGC 1015 36 100.0 30 .................................... TTCTCTCAAAGTGTTGAGAAGTCCCTTTAA 949 36 100.0 30 .................................... AATGTATCATTCCATAGTGCTTTCAACGAG 883 36 100.0 30 .................................... AGTAGATATCGCTATCAACCGAAAACTAGA 817 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCA 751 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 685 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 619 36 100.0 30 .................................... ATTCCATTACAGTTGTTATGGTAAAAATGA 553 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 487 36 100.0 30 .................................... TGCTTGTGCTTTTGTAATTTTTGCTACTGT 421 36 100.0 30 .................................... GCTATGATGACTTGCTCAGTATGTTTAGTT 355 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 289 36 100.0 30 .................................... AAAAAACAAAAGTCAATATAATGTTATTTT 223 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 157 36 100.0 30 .................................... AAAAAACAAAAGTCAATATAATGTTATTTT 91 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGAATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTTTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CCATCACAGATACCGGAAACGGTGGTTATTAGTTTTAGAGCTGTGTTGTTTCGAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 22929-24188 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHHH01000020.1 Streptococcus thermophilus strain St-9 NODE_20_length_34828_cov_2.513_ID_6732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 22929 36 100.0 36 .................................... AGCGCGTGCAGAGGAGTTTGAAAATAAGTACCTTCG 23001 36 100.0 37 .................................... AGATTTTAACAAATTCTTTTAATTCTTCTAAGTTATC 23074 36 100.0 35 .................................... CTACGCTAAAGAATTTTGGTACAGCTGAAACTTAC 23145 36 100.0 36 .................................... TAATTTTCTTTTAAACTATCAACAATGTCTTTTTCG 23217 36 100.0 37 .................................... AATAAATGCATTTTTTCGTTGCTTCGGAAAAGCTTCA 23290 36 100.0 37 .................................... TCAAGATAGAATTGATATATCCAAAAGAGCGTTTTGA 23363 36 100.0 36 .................................... TGAGAAACATAGAAAACATGGTATGAATTATCATAG 23435 36 100.0 36 .................................... GGTCAAAATCAATGATATCTACGTTCTTAGTACCTG 23507 36 100.0 34 .................................... ATAAAGTTACTAAAGTTTACACTTATTGCCCCTT 23577 36 100.0 34 .................................... TGGTAGCGTATGTTCTAACTGGCATTATTATTTC 23647 36 100.0 35 .................................... AAAAAAAGTTGTTTTAACGTGAATTTGCTGCTTTT 23718 36 100.0 36 .................................... CCATATACTCTAGCATTTCCATACACTTTAGCATTT 23790 36 97.2 37 ......A............................. ACGTTTACTCCCTTTATTTATCTTACAAGTATATTAT 23863 36 94.4 34 ......A........G.................... TGAATGTCGTTAGTTACCACATCGAATCCAGACA 23933 36 97.2 40 ......A............................. GTGGCAGTAACTTTAACTTTAATAGAAGCACTCATGATTA 24009 36 97.2 38 ......A............................. CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 24083 36 94.4 34 ......A..........T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 24153 36 80.6 0 ......A.......................TTTTTG | ========== ====== ====== ====== ==================================== ======================================== ================== 18 36 97.8 36 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 27829-27463 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHHH01000026.1 Streptococcus thermophilus strain St-9 NODE_26_length_27885_cov_3.14835_ID_6744, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 27828 36 100.0 30 .................................... TTCATTTCTTCCTCAACCTCATACCCAAAC 27762 36 100.0 30 .................................... GCATTGACAGGCGATATCGTGTTGATGTCT 27696 36 100.0 30 .................................... TTCATTTCTTCCTCAACCTCATACCCAAAC 27630 36 100.0 30 .................................... GCATTGACAGGCGATATCGTGTTGATGTCT 27564 36 100.0 30 .................................... CACACTTGCACAAGTATGTTTCAATCTTAT 27498 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CTGTGTTGTTTCGAATGGTTCCAAAACGCATTGACAGGCGATATCGTGTTGATGTC # Right flank : TTTTGTTATCACAATTTTTGGTTGACATCTCCTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAGGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : CGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //