Array 1 89826-90158 **** Predicted by CRISPRDetect 2.4 *** >NZ_VICB01000014.1 Actinomyces johnsonii strain CCUG 34287 CCUG34287T_0000014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 89826 28 96.4 33 ..............C............. CGGCGTGATTTTCGGGGACCTGGGATTCGGCAA 89887 28 100.0 33 ............................ GTCCTCCCCGGTAACCCAGGTAGTGCGCACCCC 89948 28 92.9 33 ............T.C............. CAGGTTGCGCGACCGCGCGGCCTGGGACTCCAT 90009 28 100.0 33 ............................ GTCCGGCAGGCGCAGGGTTCGTCTCGACGACGA 90070 28 100.0 33 ............................ GCCCGCGATACGCTCGGCTCCGAGCTCGACCAC 90131 28 89.3 0 ..............C........CC... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTCAGCCCCGCGCAGGCGGGGGTAGAGG # Left flank : CGGGCTGGATGCTGCCACTCATCGGTGGGCTGGGCCGCCGCCACCTGCCCGTCCTGCGGGGGGTGCTCGTGGCCGGGGGGCCTCGGCCTCCCTGCGTGGGACTCGCGGTGAGAACGGGGGTGGTTGAGGCGAGACTTGCCGAGACCAGGACATTGGCTTCCCTGCCGCGAGTTCTGCGGGCCGCCACGGCTCCTTTGTCGCAATGGACCACCGTTGTGCCGACGGCGGAGGATCCTGAAGGCATCATGCGCATGCTGAAGAAATGCGCCTTGGGGCTCGGCTGCGGACTCGTTGAGGTTGAGCGGCACTCCGAGTCGCGAAGCGACGGAGGCATTGATGTGCAGGAGGACAACGGGCGCTGGCACGTCTCGGTCGCCTTCGACGCGGTGGTGCCCGGGCCGGTTGTCTTCGACGGCACGCTCATGGTTCCCCTGGGGGCCACCACCTTGGCGGTGAACCCACGGCGACCCCGAGCCGACTAACATCGCAGGTCAGCCAGT # Right flank : GCACAGACGTGCGGCTTGCGCTGTGCTGGGCCAGGCCCGCTGGCCCAGGATGCCTATTGCACGAGGGTGGGGTTGTACTGGCCAGGGGCGGCCGGGGTTGATCGAGAACGTACTTCTTCCGCGAGAACTGCGTTATCCCGCAGACGACTGGGGGCAGACCCCAGTGGTCTGCGGGAAAAGTACGTTCCCGAAGGGAATCGCAGTTCCCGATGCGGGAGCGCTGATCCCTGCGCCGTCGGAACGGTCGCCCGCCGCCCCGCCGTGCCGGTCTACTTGGTGGGGGTGCGGCCCAGGGTCAGGTAGCCGGGGAGCGTCTGGTCCTGTCCGGCGCTGGAGAACCGCAGTGGCTGGCCCGATTCCAGTGGGTTGACCACGCGCACCAGGATCGTATTCTCACCCGCCGGGTCCTCCGGGAGCTGGCCGGAGAAGGTCTGGGTCTTGCCGACCTCGATCTTGCGCAGATCGCCACTGAGCGTGGTGCGCCCGACCTCCACACCGGT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGCCCCGCGCAGGCGGGGGTAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 65078-66265 **** Predicted by CRISPRDetect 2.4 *** >NZ_VICB01000025.1 Actinomyces johnsonii strain CCUG 34287 CCUG34287T_0000025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 65078 36 100.0 28 .................................... AACGGTCACCTGCTCCATGCGGGCGGCT 65142 36 100.0 28 .................................... CACTCCTTGTGGTGGGTGGCCGTCATAT 65206 36 100.0 28 .................................... TTCTTGGTGCCTTCAGGGCCTCGATGTC 65270 36 100.0 28 .................................... CGCAAAGCCTCGTCCGATGAAATCGACG 65334 36 100.0 28 .................................... GCGGGACCCTCCCGCTGAAACTCCTAAC 65398 36 100.0 28 .................................... AAGGGCGAGATCACCGCCGAGGAGTTCA 65462 36 100.0 28 .................................... ATGAAGGGCTTGTCGGGCCAGTTGGTCA 65526 36 100.0 28 .................................... TCCATCGTCGTGGGGACCGCCGAGTCCA 65590 36 100.0 28 .................................... AGGCCGAGGAAGAGGGGCTCGTTGTCCT 65654 36 100.0 28 .................................... TTATGGGCAGTGACGGCTATGGCTTCTT 65718 36 100.0 28 .................................... CGCGGCAGGATCGAGAAGCGGACCTCCT 65782 36 100.0 28 .................................... AAGAACGGGGGCTCCAGACGCGTGACGG 65846 36 100.0 28 .................................... GCAAGGACGGTGCTGACGTTGACGCCGT 65910 36 100.0 28 .................................... CTCACCAACACCCCCACCGGAAAACGCT 65974 36 100.0 28 .................................... TGGGTGATGAACGGGTCCCGCTTTGTCA 66038 36 100.0 28 .................................... CAGGCCGTCGGCTACTGACCAACTCTGT 66102 36 100.0 28 .................................... ATGGTTTCCTTCATGCTCCGATCCTACC 66166 36 100.0 28 .................................... AGGTAGTCGCTGGTGTTCATCTCTGGTT 66230 36 94.4 0 ..........................A........T | ========== ====== ====== ====== ==================================== ============================ ================== 19 36 99.7 28 GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Left flank : CCTTCCGTGAGGACGGCGCCACGCTCCCGACCGTCTTGGAGGAGCTGGCTCAGCACTTGGGTCAGTACTGCGAAGGGGACCGAGCCCGTTTGGATGTCCCATCCTGGACCGGTCCGAGGCGCAAGTCCTGATGGCGGATGATCCGGTGTGGTGCGTGGTCATGTTCGATCTGCCGGTGGCGACGAAGAAGCAGCGCAAGGAGGCGACTCGCTTCCGCCATCTTCTCCTGGATGAAGGCTTCTGGATGGCGCAGTACAGCGTCTATGTCCGCTACTCCCCGACCGTGGCCGGGGAGCCCCGCAGAGCGGGCACGATCCGGAGCAACCTGCCTCGTGGCGGCGAGGTGAGAATCCTGTATGTCACCGATCGCGAATGGTCGCACGCGCTCTGTTTCCGCAACGAAGAGCCCGTCCAGGCCGAGCCGGAGCCCCAGCAGCTCATGATCTTCTAACCTCTAGCGAGGTGTTTGTGCTGGTCAGACCCCCTTGATAGACGTTTTA # Right flank : TCGTCGGGGAAGGGTTGGATGGGCGATGAACGGCGTCGAACGCGTAGGGCTGCCGTAGGCATCGCTGATGGCGTTCCAGCGCATCATCACCCATCCACGAATGACCACAAACCCTCTGAAACCTGCGGATGCGTGAAACTACATCACCAGCTGGCTCGACGCCGACCAGACCTGAGTTCCCACGCCGGGCAGCCGTCACCGCGACATCCTCGGCTAGCTCCTCATCGACAGCAACTCCGCGCGCTTCGACAGCCTCCGCTAGATCAACCCCAACAGCAGATAGTTCCACCGCTGCGCGCTGACTCCGTCGGGGAAGGGCGGTGTGTAGGCAGGTGGAACCCGCCCGCACACCGCCCCCGGAACACGGATGGGGGCAATGGCGTCACCGTCCGCTTCACCCCGTCTTGCCCCCACCCGTGAGTCAAGCGGCTCGCACAGCCTCAACTCACCGAGCCGTCGTCCTCCTCGATGCCGGCCGCGGTACCCAGGCTCTCGACGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAAGGGGTCTGGTGACTGATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 107939-109117 **** Predicted by CRISPRDetect 2.4 *** >NZ_VICB01000004.1 Actinomyces johnsonii strain CCUG 34287 CCUG34287T_0000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 107939 36 100.0 35 .................................... TTTCCTTAGTTCCACGGCCGAGTCCCCGAGGGCGG 108010 36 100.0 39 .................................... TTGTGACAGGTGATCCTCATGTTTCCCTCTCTCTCAGGG 108085 36 100.0 35 .................................... CAGGCCGGGATCAGCGACTTCGCGTTGGAGTAGAT 108156 36 100.0 34 .................................... CCTTCGTCGTCACCAGCCACAGCACGCCAGCCTC 108226 36 100.0 35 .................................... TCGGCATTACCTTCAAGCCGCGTCTGGGGCGTATC 108297 36 100.0 34 .................................... ATGGTGGTGTTGTTGCGATGATGGTAATCCCAGA 108367 36 100.0 34 .................................... TCGGCAAATGCAACCTGTGAGACAATCACCGAGA 108437 36 97.2 34 ..................A................. TCAGAGCGTCTGCTGATGCGCCATTCTGGGACGT 108507 36 97.2 35 ..................A................. AACGCCGTCAAGTCGCGGCTGGGAACGAAGACATA 108578 36 94.4 35 ..................A...............A. GGTTGGTTCCGTGTGGTGATCTGGTAGGTGGCCGT 108649 36 100.0 34 .................................... CCTTCGTCGTCACCAGCCACAGCACGCCAGCCTC 108719 36 100.0 35 .................................... TCCTGCCGCTTCTTGTCCACAACGATAACTCGCCG 108790 36 100.0 40 .................................... GAGAGGGGTAGGAGCCCGGCGGCAGGCGCCAGGCCCACCC 108866 36 100.0 35 .................................... TGCTCAAAGGAGTGCCGCCAGGCCTGGATAACCGA 108937 36 100.0 36 .................................... GGGGTCGACCTCCTGGACCTGTGGCGCGGCACGCTG 109009 36 100.0 37 .................................... ACCGGCGACAACCAGATGGTCTCCGCCGACAGCGAGG 109082 36 97.2 0 ..................................A. | ========== ====== ====== ====== ==================================== ======================================== ================== 17 36 99.2 36 GTTGCAGTTCCTTCGGGAGCTGCACTTCATTGAGGC # Left flank : CTACAAGGGAGTGACGGCACGCTGATGCGTGACGATGTCAGACGCGTCCTTGTGGCCTACGATGTCCCGTCCGACCGGCGCCGAACGAGGGTGGCCAAGAAGTTGCTGCAATACGGTGACCGCATCCAGTACTCCGTGTTTGTCGTGGACGCGGCGCCGGCCAAGCTCCTGCGGATGCGGGGCGAGCTGGAAGGAATCATCAAGACAGATGAGGACTCCGTGCTCCTATGCGACGTCGGTCTGCTGTCCTCCGTCGATGAGCAACGGTTCTCCTACGTCGGTCTGACCAGAACCATCACATCGGAGGGGCCGCTCATCGCCTGACGCGAGCGCTCCGGTGCTCGGAGAACCTCGGGCAGCGCTCGCAACGATAAAACGTTGGAACGGCAGGGATTAGGTGGACTGAGCTGAAGACAGATACGGCTTAGTCCAAGCCCTCGCACGGAGCGCTCGCGAAGTGGCCTCAGATGGGCTTGGTGGCAGGCTATACTAAGCGGACC # Right flank : CAGGCGGGAATTGAGATGTCTATTTCGGCTTTCGATTCCCGCCTGCCGCCTCATGTGTCACCCGACAGGTGCGCCCGGCCCCCTCCAGGGCACTGGGCAAGGCGGTGAACAACCGGTCGGCGTCGACGGCGCTCGCGGCCGCGACGGCGGAGTCGACTCCGCCAGACAGGGAGGCCAAGACGTGCACGAGGATCTCCTTCAGGCAGACGGGTGACCGTCACTACGACTGTGGCAGGCAACCGCAGGGCGACCGCGACGGGGCAACCGGAAGAATCCAGGGGACCTTGCTGTGATCGGCACAGGACGGCGCTGAGGAAGGAACTGTCATGATCGACGAGTACGCCATTGACGCCCGCAGCTTCTCCCAGACCCGGCACGATCAGCGTCGAGATGATGAAGGACTACCACCGGATTCTTAAACGGGGGACCGCCGATGCGAGGCGGCCGTCCTTCGCCGGCGGGGACTGCAAACGCGTTCCCAACGTGGTGGGAGCACGTGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGTTCCTTCGGGAGCTGCACTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 250150-250485 **** Predicted by CRISPRDetect 2.4 *** >NZ_VICB01000004.1 Actinomyces johnsonii strain CCUG 34287 CCUG34287T_0000004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 250150 29 96.6 34 ............................G CCGCTCAGAGACGCTCACAGCGCCCCTGAGCGGC 250213 29 100.0 32 ............................. GTTCCGTACTCTCCGTACGAGAAATTTCTACA 250274 29 100.0 32 ............................. ACCCCACCGGTCGACGATGACGTCGTCAATGC 250335 29 100.0 32 ............................. AGCCCAACATTACGCGCACCAGCAGGTATTGT 250396 29 96.6 32 ............................T GATCGCGCAGATGACCGCCGCCGGGCTGTCGG 250457 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 6 29 98.9 33 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTAGCCGGTGGAGCGAACTACGCCGGAGAGGATGCAGGTGGATGGTAGTTCTGATCCTGTCGGCAGCCCCCGCCTCGTTGCGGGGATCCATGACCCGCTGGCTGCTTGAGGTCTCTCCCGGGATCTTCGTCGGGCATCTCTCAGCTCGAGTGCGAGAGCAGCTGTGGGAACTGGTCCGCACATACATCGGGGAGGGGCGGGCGCTGTTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGCGGTCGCCTCCCTGGGGCATGAGCGTGAACCTGTCGACATCGAGGGGTGTCTTGTTATGCGCAGCCCGTACCGGCAGATCGGGGGAACGCAGGCGATTCCCGGTGCCGTTAAGCCTCCGAAGGAGTCATGGTCGATCGCCGCAAGACGACGGCGCTACCGGAACTCGGCGGAGCGGGCTCTAGGTTGGCACTGAAGGTAAACGCGGTCTGGTAGCATGGCTCATCGTTGGGATTCCAGGGATCCGCAAGT # Right flank : CTCGAACGCCCCGGTGGGTAGTGCCCCGTAGTGTGGTGTAGCGCGGTGGCCGGGGCGATCTTGGTGCCGGAGTCGGACAGGACCCGGCAGATCGGCCAGGCCCCGAAGCGCTCCTTGTGCCGGTCGATGTACTGGCAGATCAACGCAACGGGCGCTCGCACTCCGCTGCCCCAGAGACGAGGCCGTTTCGTGGGGAGGTTGCTTGCACCTGACTAGGACACGCCAAGGCGGTTGCTTTACGAATATATCTGGGATAGGGCAAACTAATGCCGCTGTTCGACACCAGGGCAAGGTCGAGCAACGGCGCCTCCCGTCCCCGCGGGGCCGTCTTTCCAATATCCCTAGCCGTCACGCGCCGGACCCTCGACAAGGTGGTTCGAGTCGCTCTGCGCGCGGTCCCCTCCCTGGATGGGGCTTGTGTCGGCCGCCTGACTTGAGGAGTTAGGACGATGAGTGTCAGAAGGGCCGCAGAGGCCATCTTCTCCCCACCGGTTCAGAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4638-4426 **** Predicted by CRISPRDetect 2.4 *** >NZ_VICB01000030.1 Actinomyces johnsonii strain CCUG 34287 CCUG34287T_0000030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4637 30 96.7 31 .T............................ GATGGAGATCTTCTTCATGGTCCTCGGAACG 4576 30 100.0 31 .............................. GCGACGGCCGTGAGCGCCATGCTCCACATCT 4515 30 100.0 31 .............................. TCGTGGGGGGAGGCGCGGTGACATCCTGTGG 4454 29 86.7 0 .T.....................G..C-.. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.8 31 GCGTTGACCCCGCGTGAGCGGGGATGATCC # Left flank : CGCTCACGCTCAGCCGCTCAGCCGCTCACAGGTGATCAGTGATGTCGGTGGCCACTGCTAGGGTGGCTGTGCTGGCGGGATTCCAGGGGCTGCTA # Right flank : TTTTGGGCTGGGAAGCCGCTCAGGGGCGCTGTGAGCGTCTCTGAGCGGCTTCCCTCGTTATGTGTGCCCCGTCCTGGCTCCTAGGGGGTTTCGGGGCGTCTACGTGGCTGTGAGCGTCTCTGAGCGGCTTTCTCCGTTGCGCGTGCTCATGCTTGAGTGCGTCGACGTCGTAGCCTTCCTCGGCTTCGCGGGTCCAGGCCCGCAGCTGCTCGTCAGTCATGTGTACCGGCATGCCGGATACCGTAAACGGCTTTGCTAAGTGTTTTTGGGGCGTCTGAGGTCGCTGCGGTAGCCCCGTCCGACGCGGTGGGTGGTCCAGTAGTCGATGGTGGTGGGTGTCCAGCCGCGGATCTGTCGGCCGCCCTGCCCGTCGGTGATGATGACGTCCGGCGGGGGCAGGAGTCCTTTGCGGGTGTAGGAGGCGAGAGTGCCCGAGCTCAGGCCGACGCGTTGGGCGAAGCCGGCCAAACTTAAGTATTCCCGGGGGGGCTTCTTATTGG # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTGACCCCGCGTGAGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.20,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 187989-187664 **** Predicted by CRISPRDetect 2.4 *** >NZ_VICB01000010.1 Actinomyces johnsonii strain CCUG 34287 CCUG34287T_0000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 187988 38 100.0 34 ...................................... ATCTGATGCCAAACAGGGTTCACTCAGTTGAGCT 187916 38 100.0 35 ...................................... CAAAATCAAGGCTCCACCGTGTCGTGACAGTGAAA 187843 38 100.0 34 ...................................... AGCCGGCAGGCACCTCATAGTCAGCCGGAGCCCA 187771 38 97.4 32 .....................................A CGAAACGCAGAGGCCAACAATGATTGATTTGG 187701 38 86.8 0 .............TC.............T...A....C | ========== ====== ====== ====== ====================================== =================================== ================== 5 38 96.8 34 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTGAGACT # Left flank : GATCGGCACGGCGAAGCCAAGGCACGAGCACAGTCCTTTCTTCATCGCTGGAAAGACCAGTAAAACATCAAGGTCCAGGTCAACCGTGTGCAGCAAATAAGGTGGACCGTGACTCGGAGGCGGTCGGGTCCGTCGTCTCCGAGCAATGGACCATTGATGACCGACACCGACAGGCAGCTCGACGCCTTCCTGACCTACCTGCTGGACGGCCGGACGGCTCGGCGGGGGAAACACCCTTGACGCCGAGTCCAGGGCCCGGTTCCACCTCCACCACAGCAGGTTGTGCCTGCAGTCACAGGTCGAAACGTCGATCTTTTGGCTTGATCTCGTCGGAAGCTGGTGGCCGGAGGCACCGGAGGGGACGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGACGGTGCCGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGATGCCGCTCCCAGAGGCAGGG # Right flank : GAGGGATAACCTCTGCCGTTGACGCCATCGTCAGTTGCCAACAAGGCCGGCGAGTGAGCGGAGACCGGTGTCCACAGAACGGACATGAACGCGGCTGAGGCATCGGGAGCCTAGCGAGAACCGCAGAATCCCGCGGTTTTCCGCCCAACTACATCGCCGGTAGCCTCGGCCATGTCCGCTGCATGGACACCGAACCGCTAGCACCGCGAGAGAACGGCCCATCCGACCACAAATCCGTTGACGGCAAGCACCATGCACGCGTTGATCTCAGGTAGATTCGCGCCAGGTGACCTCACAGGATTCCAGCAAGCGTCACGCGACCGAAACGGCTATACCGCAGGGAGCCCGGCCATCAGGCGCTAAAAACATGGGCGGCGCCGAGAAAATCGGCGACCGCCCCCTCGCGCCCACTTGTCGCTCGCTCACGAGCGCCGTCAGCACACCGGGCAGACCAACATAACCAGGCGCCCCGCACCGGCCCCGCTTCAGCCGCGGCGCAG # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTGAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 2 190076-190910 **** Predicted by CRISPRDetect 2.4 *** >NZ_VICB01000010.1 Actinomyces johnsonii strain CCUG 34287 CCUG34287T_0000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 190076 37 100.0 35 ..................................... TGGTTATCGCGGGTCTAAGCCTCGGCGGTTTCGTC 190148 37 100.0 35 ..................................... ATCGTGGACGACGACGGGCACCAGTGGGTGCAGCG 190220 37 94.6 36 ......................GA............. AGGTCTACGACCGCCTCCTTGACTGGGCCCGCACTC 190293 37 94.6 38 ......................GA............. GAGTATATCCGCACTCTCGATGACTCCTCCGAATTCAG 190368 37 100.0 34 ..................................... CCTGAAAGGAGAAAGTCATGAGTATTGTTACTAC 190439 37 100.0 37 ..................................... GCGTGAGACGGGCGTGTCTCGCGTGTCGCTGGACGAT 190513 37 100.0 36 ..................................... AGCGAAGTCCCTGGCTTATAGCCGAGATTCGCAGGA 190586 37 100.0 36 ..................................... CCATGTCCGTGGCTTACCGGACGTTCCTGTTGCAGG 190659 37 100.0 33 ..................................... TGTGAAGACCACTACCATCTCTGTTGATGAGAA 190729 37 100.0 35 ..................................... ACGCCAACTGGGTGCACCTGAGCACCCGGGTGGTG 190801 37 100.0 36 ..................................... TAGTTAAAAGCGGTGGAAATATGAAATGGATAATTA 190874 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 99.1 36 GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Left flank : CACGTACTTAAGTTATAAGTTAAAGGCTGGCGTTGGCAACCGTTCTTTCGGTGGCGTCATCGTCCTGCCTCTGCGTCGCCGCTGAAGCAGGGTTGGTGTGGGACATGGATATTGGTCCGCCGACGCGTTGACTGCGTCCCGTGAGCGGGCGACGAGCAGGCGGCTGGGCTCCTTGGCACGGCCCGCCTGGCTTTGCGTCTGCTGGCCGGTCCCTGCGGTAGAGGCGTTTCGGTTGCGTGATGCTTGCTGGAATCCTGCGAGTTCACCTGGCACGAATCCACCTGGGGTGGAGGCCTTGGTTGTCGTCGAGGAGGGCGGCGCCCGTGGTGGCGGGGTGGTTCGGGTCGGCTCGGAGGGCCTGTTCAAGGGGCTGGCGGTCGGACTGACCGTTTTCCGGCGCTGTTGGCAGCCACCGCACGGCAATTCCGGTGAACAGGCCTTCCGGTGCCGGGTGCCTTCTGACGCGGAAACGCCGAGACATTCAAATTGGTCGGCATGGT # Right flank : CTCCTGCCTCTGGGAGTGGCGTCGTTGTGCCACTTCCGGGGGATGGAGCGCCACCGGCTCCGCAAGCACCCCGCGGGACCGGCCGGCACCGCCCCTATTTAACCACTTTTCGGCGTCCTGACGCCAAGCGCCACCGACGCCCCCTCGGGCGCCTTCAGCTACCAACTTCCAACGACGCCAAGCCAAAAGATCGACGTTTCGACCTGTGACTGCAGGCACAACCCGCTGTGGTGGAGGTGGAACCGGGCCCTGGACTCGGTGTCAGGAATGTTTCCCCCGCCGAGCCGCCCGGCTGCCCAGCTTGTCGACGAGCAACCAGATCCCACCGCCGATGAGGACCGACCCGATAAGACCGAAGCCAAGAATCCATCCCCATCCTGCGTCCCAGCCGCCGATGTGCTGGTGCCGGACCGCAATGCCCTTAGCGGCCTCCCAATTGGACCAGATCTCCAGGAACACGCTCAGGGGCAGGCCGATGAAGGTCAGAACCGCCAGGGCGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 205707-205377 **** Predicted by CRISPRDetect 2.4 *** >NZ_VICB01000010.1 Actinomyces johnsonii strain CCUG 34287 CCUG34287T_0000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 205706 37 100.0 36 ..................................... GTTTGAGGTGGGGGCATTGCCTGGGTGCCGTCCCCC 205633 37 100.0 37 ..................................... ATCTCCTTCAATCGTTGCAAGCCACCCTGTGTGCCCT 205559 37 100.0 37 ..................................... CTGGACGTCGAGACGCCCGCGCTGCTTAATTGATCGC 205485 37 97.3 35 .......G............................. TCAGAAAAAGAAGAGTAAAGAACAGTCATTGTAGT 205413 37 97.3 0 .................................C... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 98.9 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : ATCGTCCTTGACGACCTCATTGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTTATTCATCTTTCTGAGGTTTTCTATGGTGTGTGTCAGAAAGCACCCAGCACCACAAGGTGCATCAAGACGCAACACCGTGACCCTGATGACCCTTAATCCTGACAACAGAAGGCACCTCACACACCAGTGAGGAGCATCAAGGCCGCCTCCCAACGGTCGCCTTGCGCCCTCCAACCGAGGGGCCCCAAAGCCCTAACAGACCGACAGCGGAAGCAGGATGTGTCGACAGTCACAGGCGGGAACATCGATCTTTTGGCTTGACATCGTCGGAAGTTGGTAGCTGAAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCCAGCCGGCCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCTCCTGGAAGTGGCGCAACGACGCCGCCCCCAGAGGCAGGGGG # Right flank : ATATATATCGACATGTGCCGGGACATCGCATGCCCATTTTTACCCTTGTCCGCCAGAATCTCGATATTCTGCCCTCTAGAGCCTCTTCACGTTCCCGCCCTTGAAAGGCCGCAATGATGCGTCCAGCCCCGCCATTACCACCACCATCGTCAACGACACCACCACCTCCACCCCGCCCGCACCGTCGTCGCCGTCGTTCCGATCGCGCGAAACCGGGCCAGCACCTCGGGGAGGATATTCACCCGCTCCAGCACGCGGCGGGCTTTGCATCGTCCGAGGCGGCCACCGGCACCCCGTTCGAGCGCATCAGCTCCCGCGAGGGCCTGGAGGAAGGCTGGCGCATGGTCCTCACCAAGGACGCCTCCGACGGCATCCTGCAGCGCAAGACCAAGGAGTTCGCCGAGCATCTCGATGACTTCCTCACCGAGCTCTCCGAGTCCCTGCGCTCAGGAACCTACGAGCCCGACCCGCTCCTGAGCTTCGGCATCCCCAAGGGCACG # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 4 206408-206003 **** Predicted by CRISPRDetect 2.4 *** >NZ_VICB01000010.1 Actinomyces johnsonii strain CCUG 34287 CCUG34287T_0000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 206407 37 100.0 37 ..................................... TTGTCGGGCATGAGGCCTGTGGCCCAGGACAGGTCAC 206333 37 100.0 38 ..................................... TTTCTTCGCCCGCCTCGTTGAAGTACTGCGTGGGCTCC 206258 37 100.0 36 ..................................... GCTTCCAGGGGCCGGATCGTCCTTGACGACCTCATT 206185 37 100.0 34 ..................................... GTTATTCATCTTTCTGAGGTTTTCTATGGTGTGT 206114 37 94.6 35 .....................C.........C..... GCAACACCGTGACCCTGATGACCCTTAATCCTGAC 206042 37 78.4 0 AA.....G.......C......T...A....C...G. | G,A,T [206017,206025,206029] ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 95.5 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : CGAGGACTCTGCCCCAGGCGGCGTGAAGGCGGCGGGGTGTGGCCTCGACCGGGCCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGATGAGTGGCGGACATGGCCGTCTACCCCTTACTTCTGGCGACCCTACCGGAGGGGAGGCGGCCTGTATGGGGAGTTCGAGAGGTCGACGTTCTTCAGCATCGACGGCCAGGAGGAGGTGGAGGGGACGAGGCCCAGCGGCGCGCCGGTCGAGCCACGGAAGCACAGTGTGTCGACAGTCACAGCTGGGAACGTCGATCTTTTGGCTTGACGTCGTTAGAAGTTGGTGGCTGAAGGTTCCCGAAGGGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCTGGCCGGCCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCCGCCCCCGGAAGTGGCGCAACGACGCCGCCCCCAGAGGCAGGG # Right flank : CGCCTCCCAACGGTCGCCTTGCGCCCTCCAACCGAGGGGCCCCAAAGCCCTAACAGACCGACAGCGGAAGCAGGATGTGTCGACAGTCACAGGCGGGAACATCGATCTTTTGGCTTGACATCGTCGGAAGTTGGTAGCTGAAGGCGCCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCCAGCCGGCCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCTCCTGGAAGTGGCGCAACGACGCCGCCCCCAGAGGCAGGGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACGTTTGAGGTGGGGGCATTGCCTGGGTGCCGTCCCCCGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACATCTCCTTCAATCGTTGCAAGCCACCCTGTGTGCCCTGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACCTGGACGTCGAGACGCCCGC # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,14] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //