Array 1 246693-246175 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXX01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-2955 NODE_3_length_725702_cov_54.386426, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 246692 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 246631 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 246570 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 246509 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 246448 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 246387 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 246326 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 246265 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 246204 29 93.1 0 ............TC............... | A [246177] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 264560-263007 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHXX01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain Sal-2955 NODE_3_length_725702_cov_54.386426, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264559 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 264498 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 264437 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 264376 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 264315 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 264254 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 264193 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 264132 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 264071 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 264010 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 263949 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 263888 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 263827 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 263766 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 263705 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 263644 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 263583 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 263522 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 263461 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 263400 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 263339 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 263278 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 263217 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 263156 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 263095 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 263034 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //