Array 1 218538-216797 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKB01000002.1 Salmonella sp. S116-49672 NODE_2_length_664879_cov_140.114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218537 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 218476 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 218415 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 218354 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 218293 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 218232 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 218171 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 218110 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 218049 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 217988 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 217927 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 217866 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 217804 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 217742 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 217681 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 217620 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 217559 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 217498 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 217437 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 217376 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 217315 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 217254 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 217192 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 217131 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 217070 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 217009 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 216948 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 216887 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 216826 29 93.1 0 A..............A............. | A [216799] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 235895-234708 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPKB01000002.1 Salmonella sp. S116-49672 NODE_2_length_664879_cov_140.114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235894 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 235833 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 235772 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 235711 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 235650 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 235589 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 235528 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 235467 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 235406 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 235345 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 235284 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 235223 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 235162 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 235101 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 235040 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 234979 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 234918 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 234857 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 234796 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 234735 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //