Array 1 479821-480449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPJ010000003.1 Listeria farberi strain FSL L7-1693 NODE_3_length_485646_cov_52.397575, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 479821 36 100.0 30 .................................... TGGACATTTTGACGAATGACATCACGCCGT 479887 36 100.0 30 .................................... AAGGAGTCGCTCAGTTTTACGGAGCTAGCA 479953 36 100.0 30 .................................... GCAAAGTTATGTCTGATGTACTTAAACCTA 480019 36 100.0 30 .................................... CATACAGACTCGAAATTACGAAGATAACGA 480085 36 100.0 30 .................................... TGATTCTTGCTGCTCTTTGTCGAACCAGTC 480151 36 100.0 30 .................................... TCATTGCTTATGGTGCTGGTGCGGTAAGAA 480217 36 100.0 30 .................................... GTGTAATGTAAAAGGTTTCACGCTTGACAA 480283 36 100.0 30 .................................... AGAAATTTGTATAAAATATTGTCCAATGTG 480349 36 97.2 30 .........................A.......... AGAGAGGATGAACTCTAAATAATCGGAAAT 480415 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACCGCGACGATTAGTGAGTTGATTGGTTATGAGCTTCTGGAGCATGAATTGGATTTAGAGGAAGATGAAATTACGGTTATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGAAGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGATTTTCGCAAGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATATAAATTTCAAATGATCTTTGAAAACTAAATAGATTTTATATGAACCATAAAATAAGTATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CACATCTCTCAATCTACTCCAGCTAGAAAGAGTTACACCATTATGAAAGAGGGACTCCAAACATTTTAACCCAACCTGCAATTTCCAACTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGCGAAGAGCAAAAGAATGATTAGGAATCTAAAAGTTTGAAAATACTACACGATTACATTATAAAAGCTAGTAAAGAAAGCAATACCTTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCCATAGAAATTTTAACACCAGAAAAGTTGGTTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACATTTACATACAGCACTTAAAATAAAAAGGAGAAACCTTATGAAAAAAACCTCAATCATTTTTATTTTATGTATAACCGTAGTACTAACAGGATGCTCCACCGCCGAAAAACAAACAAAAATAGAATATACAGAAGCAACAGGGACAATAGAGCAAGTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 313140-313559 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPJ010000001.1 Listeria farberi strain FSL L7-1693 NODE_1_length_1512479_cov_42.563863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 313140 29 100.0 36 ............................. TCTGGAACCTTTTCCCCTTTTTCCAAAACAATTAAG 313205 29 100.0 36 ............................. AATTTTATCTTGCAGGTCCATTTCATCAACAACACT 313270 29 100.0 36 ............................. TAATCATTTTGGCCACATCGACGTTTAATGTGTCGA 313335 29 100.0 37 ............................. CTCGAAGGACTGGGACGTATACGATATTTTTATTGAC 313401 29 100.0 35 ............................. AAGTTTTCCTCGTCGAATTCATCCATCGCCCATAT 313465 29 100.0 38 ............................. TTTATTGCAAATAAAGGTATTGATGGAGCTATAACTGA 313532 28 79.3 0 ............C..CA......-A...G | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 97.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : TGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCGGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTACAAAACTCAAGAATCAAAGAAGTTATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATTTCCATTGGACGAATCTTAGGTCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAATATTAAACTCAAAAACAGTAACTTAGCATAGTGCTGTTTTTTTGTTTTTAGTAATCTGTCGACCAGCAGTAACGTAAAAAACACCGAAGACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCAGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTCATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTGCACGG # Right flank : GCCCAATATATAATCTTTGCTCACATTTAAAAATTACATTTTCAATTTATATCCATTAAAATTTTGCTTTTACCAGCTATCTCAAAAACAAAAAAATAATCTGGAGGACATCGACATGAAAAAAGTTTTAATGCCACTTATGCTACTCGTAGTTTTATTATATGGTTGTTCATCACAAAACGAAGGGGTAACGAAAGAAACTGCCATTTCGAAGACGATCTCTATACGAGCGGACTACACTATTCCAGCAAATTTGGAGGAACTAACAGCGAGCAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACAATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAGAAAATAGATATCTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATGTTGCGCTTGAAAAAAATAAAGAATATACCTTGTTTCTTAACGAAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 328092-329154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPJ010000001.1 Listeria farberi strain FSL L7-1693 NODE_1_length_1512479_cov_42.563863, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 328092 29 100.0 36 ............................. GCCTCTAAGTCAATGAATGGAATAATATACTTACGT 328157 29 100.0 35 ............................. AAACTTTGCTTTTTCCAGATCAGCGGATAACTAAA 328221 29 100.0 34 ............................. ATTTTGGCAGGTTTGAAGGTACGACAGATATCGA 328284 29 100.0 35 ............................. TATTTCTTGATATGCTCACACTGCCATGCGACAGC 328348 29 96.6 35 .......................A..... GAGTATCAAGAATACATCACAGAAGAAACAATAAT 328412 29 100.0 36 ............................. TCTGGAAATTCTGGCCGTGTCGGCCCGGAAGATATT 328477 29 100.0 35 ............................. CAAAGGGTCTGCTCACAGTCGTAATCTGTAAACAG 328541 29 100.0 35 ............................. ACGTTTATATCATCTATAGTCATAGTCACCCCGTC 328605 29 100.0 35 ............................. CCTGCTGTGCTTCCATCGGCATACGTGTAACGCCC 328669 29 100.0 37 ............................. AATGGTTTTCCAGATTTATTTGGTTTTCGTGGGACAG 328735 29 100.0 38 ............................. AGAAATATACCACCAGCAGTTGTTGAAGATGCTATATC 328802 29 100.0 36 ............................. GAAGAATATTCTTTCCCGCGCACTAAAGTTCCGTTT 328867 29 100.0 37 ............................. TAGCGACGAGATCAATAACATCATCCACCGCGGCACG 328933 29 100.0 34 ............................. TTGTCACTTAATCGTATTCTTTCTGTGATGTATT 328996 29 100.0 37 ............................. TCAGTTGTTGAAGATGCTATATCCAATGGTGTTAAGA 329062 29 96.6 34 ............C................ AGTGTAAGCACAGCAATTCAGACAGCTATAATCT 329125 29 93.1 0 .......................A....C | C [329148] ========== ====== ====== ====== ============================= ====================================== ================== 17 29 99.2 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGCGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTTTTAAAATCTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAACGTCTTCGATGCGAGTTTGGTATTTGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAAGTTAAAATAAATGCTAAAATGGTCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //