Array 1 714-1221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJP010000052.1 Photorhabdus laumondii strain DE2.2 Plum_DE2.2_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 714 28 100.0 32 ............................ TTTATTGGCGGTTCTCGTGTTGTCTGAAATCA 774 28 100.0 32 ............................ ACAAAGCAGACGAGCGCAGCGGGAAGCGGTGC 834 28 100.0 32 ............................ AATGGCCGGTCAATTAGCTGGAGGAGTAGTGG 894 28 100.0 32 ............................ AACCTGATAATCCGAGCCGACATCACCCCACC 954 28 100.0 32 ............................ ACATAGCTAAGCACTTGCAATTACTTGGTTGG 1014 28 100.0 32 ............................ CGGAGTCATAACTGTAGGTTTCCACCCTAGTA 1074 28 100.0 32 ............................ AACGTGAGATGCAGTTGGAAATGAGAGCCTCA 1134 28 100.0 32 ............................ ATATGATTTGACTATCTATATTACGCGCCATT 1194 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAATCATTTTTTATCTGTAATGTTTATATTTGCTCTCATAATAACATGTAATATAGATTATATCTTTAATTAAGCTAATTATATTTCTGAAAATATGAATTGGATACTTGTTAAATTGGGTAATACTGAATTTTTCAATATTTAAGTACATGGTGAAATTAATGAAACTGTTGGAATATTGGATGATGTCACTATTGAAAGGGGCTGTGAGATTAAGAGGTACTGATTTTTGTTGATGACCGAATTCAGTGAATAGTTCCAGTATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGAACAGATGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTTATTGATTTTATGGATAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAGTAGTTATACTATTTAAAAATCAGCAGGTTAAAGTTAATATGTAACA # Right flank : ATAGAAAATTATCCTCTTCTCTTAAATTATCGAGCATGCTGCCACATAGGTAGTTTAGAGCATAATCATTCCTGTTTAGGGAAGGCACTATTCTGTGAGTTAGTAAAGAATTGTAAAAATTTTTAATTTACATCTGTAATGTTTTACTTATGTGAAATTTATACATAGTATTTACCATAAGTTAAATTAATTAGTTAGGTAATTCTACATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTTAATGGTGGCCGCGTTGAGTATGTCACTGATGAGGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTTGCTAAGGCGGGTGTTTTAGTTGGTTTTTGTGGAGGTGGAGGTACACCGCTATTTGCGGCTAATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10769-12115 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJP010000052.1 Photorhabdus laumondii strain DE2.2 Plum_DE2.2_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10769 28 100.0 31 ............................ CAGCTCACGAAATGCAACACGATGCATGATA 10828 28 100.0 32 ............................ AACCCGCTTCTGCTGCGGATGCTGCTGGAGTT 10888 28 100.0 32 ............................ TGGAATAAGAGAGTAAATGTGGAGGAGTAGCT 10948 28 100.0 32 ............................ AATCAGCAACCCTATTCACCGGAGACGTTCGA 11008 28 100.0 32 ............................ CAAGGGCACGATTTCCCTTTGGTTTTATATGC 11068 28 100.0 32 ............................ GATGTGCGGAACAATTCAGTCTGCAAATACGT 11128 28 100.0 32 ............................ AATCGAAGAGCTTCATCCTTGTGAGTTTCTTC 11188 28 100.0 32 ............................ TGTCCAAAGAGTGAAGCCGGTTCCTCCTCCCG 11248 28 100.0 32 ............................ GGCTGATGAGACAGTCCGATAATAGAACCCAC 11308 28 100.0 32 ............................ ATACCGGATTGTTAGTAAAACCTATCCACTTT 11368 28 100.0 32 ............................ CATAAGCGGGACTAACCCGCCATTAATCAAGA 11428 28 100.0 32 ............................ TGTTGAGCAGATGCCAACTCGGGTAGTGTCCA 11488 28 100.0 32 ............................ GGTCTCGATGTGCTGGTGGGTATCCCGGCTGA 11548 28 100.0 32 ............................ TCACGTCATTTGTACCAATTTACTGACAACAG 11608 28 100.0 32 ............................ ATTAGCGCAGATAACCCCAACTCGGAAGCTCT 11668 28 100.0 32 ............................ TCCTATTTTTAAATAAATCATACACCTATGCA 11728 28 100.0 32 ............................ GTTGATAGCTGGCGAGATAGCAGCGGTAAGCT 11788 28 100.0 32 ............................ TGTCGTGTTTCATGTAGTAATCTATTGCAACT 11848 28 100.0 32 ............................ ATCAGGAGTACGCAAGAGCCGGACACAGATAA 11908 28 100.0 32 ............................ ACCTATGTGTTCTGCCGACTCTTTAACGTCCA 11968 28 100.0 32 ............................ AATTAGCGAACAACGTAACATTGTTGATTCTG 12028 28 96.4 32 ...........C................ ACTCCACATCCGGCGCTTGATTCACATCTACA 12088 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTACCGTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATTCCCCAAGAAACTAAGTACCGCTGTGTCAGCCGAGTGCAGGTTAAAAGCAGTGCGGAACGACTTCGTCGTCGTGCTATTAAAAAGGGATGGTTAACGGGGGAACAAGCTCGGCAGCGTATTCCTATCAGCAAAGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAATTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGGTGGTCTTTTTCCCAGGTAAATAGCCATTTACGAGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGGTAGCCTTTGGGCACCATTACCACATCTTTATTGTGAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGTGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTATTATCCGGTAGGATGTTGTGAACATAGCGTCGGTTGTAACCATTGCCACGTTGTTCTGCATCAATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 172-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJP010000196.1 Photorhabdus laumondii strain DE2.2 Plum_DE2.2_196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 171 28 100.0 32 ............................ ACAGCCGGAAAATTAATGGCAAAGCATTAAGT 111 28 100.0 32 ............................ CGTAATTTCCTGCTTATCATTACTCTTTAAAG 51 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGACGAGGTATTGATAGTGGCCGTAGAATTTTAACGCATCAGGGGGATGCTATCCGAAATATTCAGGGTTCGTTCGCCGGCATGATAGCACTAAATTATCATTTGGCAACAAGAGGGGCTTTTTATGCTAGTCAAGTTCTTGGAATAGCGACAGATGGCAGTTTCAAATCGATAAATATTTCTGACACAGATACTCCATACGGCTTTGGGTTCGAGGCGTCAAGGGTTGTTCCTGTAGCCTCAGAGAACCGCCCTCGCAACATAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCTAGAAATAGAAGAAGAGACTGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATCATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACAA # Right flank : ATACGTTTGCACTCTTCTATATAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3553-3104 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJP010000196.1 Photorhabdus laumondii strain DE2.2 Plum_DE2.2_196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3552 28 100.0 32 ............................ TCTTGAGTGTAGGTTAGGATAAAAATAACCAA 3492 28 100.0 32 ............................ ATATTCGTTCAGCTGCAAACACAGTAAGTGAA 3432 28 100.0 32 ............................ TCAGTGGTTTCACCATAAATCTTGATTGGCGC 3372 28 100.0 32 ............................ ATACAACTAACATAGCGAGATAATCATGACAG 3312 28 100.0 33 ............................ ACGCATCAACTGGCCGAAAAAGTCAGTTCCCAG 3251 28 100.0 32 ............................ ATAGTGTAGATGGGCCATGCCTGCGTCCATGT 3191 28 100.0 32 ............................ ACCTTTTAGTTATGAGGGTGTGCGTTTTTATT 3131 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TATTGATAGCGGCCGTGGAATTTTAACTCATCAAGGGGATGCCATTAGAAATATTGTAGGTTCATTTCCTGGGGCAATAGCACTTCATTTTGAGCTGGCAGCAAAAGGGGTTTTTTACGGTAACGCAACTTTTGGCGTGGCTACAGATGGTAATCCTAAATCAGTAGATCATTTTACCCGGGATGCTGTATACACTACATACGGTTTTGGGTTCGACACGTCAAGGGTTGTTCCTGTAGCTTCGGAGAACCGTCCTCGCAACATCGCCTTTAATTACATAGTAAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCGGAAATAGAAAGAGAGACGGCTTTCTACTTGGATGGAAAAAATTTTGACCCTTTTTTAACGGTAAATTTTAATCTGTTGATTTTTCGGTAAATATTGTTTATCCCACAAAAAAGGGTTTTTTATTTTTTATAATGGTTGCTCTTTAACATTCAATAGGTTGGGGTTAATATGTAACA # Right flank : ACCAACATTTTCACTTACCAATCTATTTTCAGAACTGTCGGCTCAAGTGTATCGTTGAGAACAATGAATGTGTGTTTTATGAAGATAGAGAGCCTATGACATTCCAGAACACCGTCGCTTAGATATTCGTGTCCAAATGCCAGAAGATTCATCTTGGAATTTAAAATAGCAGGCGTTACAGGAAGAGATAGAAGGAATAAGAGCAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGTATGTTTTCGATTCTAAAATATTTAATTACTTATTACTGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGACGGATTATTTTTACAGTAATTAAATATGTTGATTATAAAAAATATTATTTTGCTTAAGGAGTAAGGATATGAGTCAAAAAAATGATTTTAAAGCTTTTTCTATTAGCGATAATGCTAATGTAATTAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 12180-13809 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJP010000131.1 Photorhabdus laumondii strain DE2.2 Plum_DE2.2_131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12180 28 100.0 32 ............................ TTTCTGTGGTTATACAACAGAAGCGATGCATT 12240 28 100.0 32 ............................ ATTCTCCGCCGCCGACATGAATATAAGAGCTT 12300 28 100.0 32 ............................ TAACACTCCAAAAAAAGTCGCTCCACCCGCTT 12360 28 100.0 32 ............................ TACTGTTTCGATATGTAATCCAGCGTAGTCAG 12420 28 100.0 32 ............................ GGATGGTTCAACGGGGCGTTATGCCTGGGTTT 12480 28 100.0 32 ............................ AAAACCGGCGCTGCGGCCATATTTGTTGTCAT 12540 28 100.0 32 ............................ AAGAATTGGAGTTTGCACTCTGCCAACTGAAA 12600 28 100.0 32 ............................ TGATCCGGATACGCCGGAACTGGAACCACTAC 12660 28 100.0 32 ............................ TCTAATCGTTCTCAAAATACATATCCATAGTG 12720 28 100.0 32 ............................ TGCATCTGGCCAAATGGATTGCCCGCAAACAC 12780 28 100.0 32 ............................ AAAAGGTGACTGGATAAGTTTTGAGCCTACCG 12840 28 100.0 32 ............................ TCCGGCATAGTTACCTATTACAGTAAAAATCA 12900 28 100.0 32 ............................ CTTGCCTTTCGCGCTCTTGGATCTCCAAGCAA 12960 28 100.0 32 ............................ CTCTGGATGTGACCTTTATCAACGAAGAAGAT 13020 28 100.0 32 ............................ GAAGAGATACGTTATGTAGCATCGGAATTAGA 13080 28 100.0 32 ............................ TTAACCCAGCGTCTCTTCCAAGTCACTTGCTG 13140 28 100.0 32 ............................ ACAATAGTAAAAGGAGAATAATATGAGTGATA 13200 28 100.0 32 ............................ CTAGCATCACGTAAGGATAAAGAATCAGGAGA 13260 28 100.0 14 ............................ CATACCAGAACTAG Deletion [13302] 13302 28 100.0 32 ............................ ATGTGGGTAGTATATCCGCGGAAGCGTTATTT 13362 28 100.0 32 ............................ TCACGTCGGTATCTCACTGGGGACCTCCCGTC 13422 28 100.0 32 ............................ TTTCAGGATTTTACCCATCAGGCGGGGATTCA 13482 28 100.0 32 ............................ CTCAAGAAGTTTACCGGTTTCTTACCGTCTGC 13542 28 100.0 32 ............................ ATAACAAAATGCCGCATTCGATGCCATTTAGC 13602 28 100.0 32 ............................ TTTCATTTCATTGCTGATAGTGCCGCCCTTGG 13662 28 100.0 32 ............................ AGACAGATTAGAAGTGTATGTGACAGAAGGAA 13722 28 100.0 32 ............................ TGAGTAAGCTTCAATGAGTTGACTTATTTGAC 13782 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 28 28 100.0 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCAGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAGTCAGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGGGTGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGGTTGAAGTTAATATGTAACA # Right flank : TGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 45747-47272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJJP010000018.1 Photorhabdus laumondii strain DE2.2 Plum_DE2.2_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 45747 28 100.0 32 ............................ CTGTTGAAATGTCGCCCCTTTTGCGCCGATGC 45807 28 100.0 32 ............................ AAACAGCATTGAAGCGGAACAAAGCGTTCTGG 45867 28 100.0 32 ............................ ACAAGTAACTATTTTCGTTACCGTAACCTTCT 45927 28 100.0 32 ............................ ATCAAGTAGTGCTTACAAAGGAGAAGAATGTA 45987 28 100.0 32 ............................ TAAACGATAACCCCATGCTTCTAATGATTGAG 46047 28 100.0 32 ............................ TTTCCGCTGTACGTTGTACTGCACTATTTAAT 46107 28 100.0 32 ............................ ATCAAAGCACAGCAACGAACAGGCAAGGAAAG 46167 28 92.9 32 CC.......................... TGATACGTCCACAGGTAGCTATTTTCGTTACC 46227 28 100.0 32 ............................ AAGGGAGTGGACCAAAGGGTAAACCTCAGTTA 46287 28 100.0 32 ............................ AATCAAACTCCAGTCAGTATCGCTATCCGTAC 46347 28 100.0 32 ............................ GTAAACAAACGAAGTATCGGTCTGCCGCTCTT 46407 28 100.0 32 ............................ AGACGTGCTCCTTGGGTCCTCTCATTAAGTGT 46467 28 100.0 32 ............................ TGCATCCATCAACATTAAGCCCGTTGACGATT 46527 28 100.0 30 ............................ GGTAGCGCCCGATCCCTGATTCAGCTTTAA 46585 28 100.0 32 ............................ TTACATAGGCGGCGAGTTCTGCACTGATAGAA 46645 28 100.0 32 ............................ GAGATGAATGACATTGCGCTTCAATGGCAAAC 46705 28 100.0 32 ............................ TAACACATCAGCAAGCTGTTGCTGTGGCAAGT 46765 28 100.0 32 ............................ ACACGTCAGTTCGATAATAAAATCCAGGTCAT 46825 28 100.0 32 ............................ AAAATGAGAGTAAGACGATTAGATAGCGATCA 46885 28 100.0 32 ............................ TTTCTCTGTATCAATAACCGCTGTTGTGCCGC 46945 28 100.0 32 ............................ AATGAAATTAATCGTTTCTCTTACAATATTTC 47005 28 100.0 32 ............................ TACTATGTTGGGATATGCTGCATTATCTAGAA 47065 28 100.0 32 ............................ TCTTGGCCCACATGCGCCACAACGTGGGATGG 47125 28 100.0 32 ............................ AGTATGCACCTTGCGGAAAGCGACAAAGTGGT 47185 28 100.0 32 ............................ AAATCCCCGGTCGCTATCAGTAATTGCATCAG 47245 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGATGTTGTGATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTTTCAGCTTGTAGTTATTTGGTTTCTAATTAGTGGATGAAGGGACCCTGGCACCAATATCTAATGTAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCCAAGTGTTCAAAATAATGTTTGAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATCTTAAGGAAAATTTAGTTGCTCTTATTGCTGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCTAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTAATTTAAAAGAAAAATAAAACATCTCCTGAAAAAAGGGTTTTTTAATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : GCGCGATAACTGCCTTAGGTTGTTAGGTATAATATTGGAGGTTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCATCTTCCATCACAACGTGATACCAGGGGGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGTGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCTGTACCCGGTAGTTGAAGCCATTTTTTGTTTTAAATTGCAAATGTGGCTTCATCTATTTTTAGGTTAGCTGTAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //