Array 1 8146-13826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGR01000186.1 Xanthomonas oryzae pv. oryzae strain IXO627 contig_186, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 8146 31 100.0 35 ............................... TTTACCGCGTCGTAGCTCTTGCCAGCACGCGGCAC 8212 31 100.0 36 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGCC 8279 31 100.0 35 ............................... ATGGTCGCACGAGCCGAACGGTCATTCCAGCGACC 8345 31 100.0 35 ............................... TGCCGGGTCTGTGCTGGTGCACTCTGGCAACTCTG 8411 31 100.0 36 ............................... GATCTGCTGTATGCTCTGCGTGACAAGGACAACCAC 8478 31 100.0 35 ............................... AACTGGAGACTGCATATTGATGTGCCGTCAGAGAC 8544 31 100.0 35 ............................... TTCCGATTGTTTCCTGCTGCTATGGCACTGCTGGC 8610 31 100.0 34 ............................... CTCTGGGACACGGCGGATATGGAGATGTGGGAAA 8675 31 100.0 34 ............................... TATTCGACATCCTCAAGCACAAGGGTATAGAAGG 8740 31 100.0 33 ............................... CCAAGCTGCAAGGTTGCCCTTCTGACATTCCCG 8804 31 100.0 35 ............................... TACATTTATTTTCCTAGCTGAAAAAGAATGTGGCG 8870 31 100.0 34 ............................... TTGGGCGATGTTGAGCACAAGACCAGCAAGGCAG 8935 31 100.0 35 ............................... ATTGTCTCTTGGTTGGGTTAGAAGTTGTATGGCCG 9001 31 100.0 36 ............................... GTGACATTGGTCGACCCATCAGCACCAGATCCGCAG 9068 31 100.0 35 ............................... TTGGCCACAATGGCATAGATATCACTAGGCAGATC 9134 31 100.0 34 ............................... ATCGTATCCTTCGCGTACTGGATCACGTCGGCCG 9199 31 100.0 36 ............................... ATCGACCAAGGCGACAGCGCCATCGGGCAAAAAATT 9266 31 100.0 35 ............................... TGGCCAACGTAGAAGCTGCAACCCTTGGCGTTGCC 9332 31 100.0 34 ............................... ACGTGCGATTAAGCAAGGGCGAGTTATCTTCCGT 9397 31 100.0 34 ............................... CAGTCTTGAACAATGTCATCATACGCGATGAACT 9462 31 100.0 34 ............................... CAACAACGCGTAGATCAAGTGACAGAGTTGGCTT 9527 31 100.0 35 ............................... AATATCAAGCTCGTAATCACCAGGCTGATACGGAA 9593 31 100.0 34 ............................... ACGCCCTTACGCGCAATGGTCGTCATACGCCGTT 9658 31 100.0 33 ............................... TTGAGCGCGGGAAGAATGTGATTCTTTACCGCG 9722 31 100.0 34 ............................... TTGCCACCGACATAGAAGGTCTTGCCATCGCCGC 9787 31 100.0 35 ............................... CAGTGCGACCGCGCGGGCGTTCTCGGCGGTAACGT 9853 31 100.0 36 ............................... CATAATCATACCCTCCCAATCTGTTGTGCCAGCCTA 9920 31 100.0 35 ............................... ATCCGCTGCTTGTACAGCGCTACAACAGCAGTCAT 9986 31 100.0 34 ............................... TGAAGACGCCAACGTGATCTACCTGCGGGACGTC 10051 31 100.0 35 ............................... AAGCTCTTCGCTAAGCGTCTGCTCAATGAAGGAAG 10117 31 100.0 35 ............................... AATAACCTGGGCGCCCATCGTCAGACCTGCATGCA 10183 31 100.0 34 ............................... CCCGTGGCGGCGTCAGAGAAAACGTTTCAGGTCT 10248 31 100.0 33 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAG 10312 31 100.0 34 ............................... ATCCGACGAACGGTAGTTGTTTCATTTTTGGTCG 10377 31 100.0 34 ............................... TTGTAGTCAGGGTCGCACAGCGCACCAGTAGGAC 10442 31 100.0 35 ............................... GCATGTAGCCGGGGTGTAGGGGCAGCGCCCCTACG 10508 31 100.0 35 ............................... CGCAGATTCGGGCACAACAGACACCTGGGCACCCT 10574 31 100.0 35 ............................... ATCGCCTGCATGCAAAGCGTCAAGCATGCGTGCAT 10640 31 100.0 36 ............................... TCCATCTAAGTCAATACAACTTGTTGGCGCTTGGCC 10707 31 100.0 36 ............................... CTTGCATGGTGTTTTGAGTACATGGGCTTTATTGAA 10774 31 100.0 35 ............................... ATCATGATCCATAACTGCCATTTGGTTGTTGGTGG 10840 31 100.0 36 ............................... ATCCGAATACAGCAGAGCAGGGCAGCTGCTGAGTAA 10907 31 100.0 34 ............................... GTGATTGATGATGAAGTCCAAGCGCTGCCCGTCG 10972 31 100.0 34 ............................... CTTTTCTCTGGATCAATAGGTCTGGCGGAGTAGA 11037 31 100.0 36 ............................... ACTCTAGTCTTTGATGTGCCTTCCGTCGCTGGGAAG 11104 31 100.0 35 ............................... ACGGATGTTGATAGTCAGCCTGGTGGGGCCTTGCA 11170 31 100.0 35 ............................... TCGCTGAGGGCAGTAAATACATCTGGCCGTCTATC 11236 31 100.0 36 ............................... GCGGCGGACTACGTCGCGGAGGCGAGCGTTAGTCTA 11303 31 100.0 35 ............................... ACCGTATCGCTAACCGATTGACGCGTGCGCAACCA 11369 31 100.0 35 ............................... CAAAGGCAGGCGGGACAATAGCGGGTGACCTGACT 11435 31 100.0 38 ............................... TGTCGATGACTCTTTCACCGTGGTTGCGGCGCATTGAG 11504 31 100.0 36 ............................... CGGGTACGTTACGCGCCCAGGGTCAACGGGCCTCCC 11571 31 100.0 34 ............................... CTGCACTACGAGGTGCTGACGATCGATCGCCGCT 11636 31 100.0 36 ............................... TCTTCACCAGATCGATACTTAACACGGATAGGTGTG 11703 31 100.0 34 ............................... TGCATCGCCCGGTGCTGCCATTGCCGGCGAGTTG 11768 31 100.0 35 ............................... ACCGGTCGCAGCCTGCAATCAGACTGGTGCAGGCC 11834 31 100.0 34 ............................... CATGTCATAGCTCCATCGCTCGGGACGGGTGGCG 11899 31 100.0 32 ............................... GTGATTCGCAAGAAATCAAACCTGCGGCTCAC 11962 31 100.0 33 ............................... CTGCCCTCGCCCAGGAAGCAGGCTTCCGGGTGC 12026 31 100.0 33 ............................... GCGAAAGCATAGCGCAGCGAGTCGATAGCAGCC 12090 31 100.0 35 ............................... TACCCGACCCGGTTTGACGATGCCCAGCGGATCGC 12156 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 12221 31 100.0 34 ............................... AATGCATCCGTACTGATTCCCACCGCTGAAAGCG 12286 31 100.0 34 ............................... TATTAGATTTTTTGTACCACATTAACATTTAATG 12351 31 100.0 35 ............................... CGATTCATCGTCTCGCCGGAAGATGGCGCGAGCTT 12417 31 100.0 34 ............................... GACGTACGCAACCAGATCGATACCACCTACCGAC 12482 31 100.0 34 ............................... GTCGATGACCATTTTGCAAGGCCAGCCGGTCGAA 12547 31 100.0 35 ............................... CTTTCGCAAGTGGCTCACGAATCAGGCTCAGGCAA 12613 31 100.0 34 ............................... CAGTCTGCTGACATCGCCGACCAGTCGTCGTCGA 12678 31 100.0 36 ............................... CTTGCGCAAGTGGCTCATGAATCAGGCTCAGGCAAG 12745 31 100.0 35 ............................... GCTGCGTTTGACCGCGCAATTGCGTGCGTAGTGCT 12811 31 100.0 38 ............................... AACGGCCAGAGCAGTGGAAATGTGTCGTTTGCGATGAC 12880 31 100.0 35 ............................... ATTACGAAACACGGGCACGAAACTTACAACGCGTT 12946 31 100.0 33 ............................... GCACGTTGCGCCTAGACTTTGATCGGCAGACGG 13010 31 100.0 35 ............................... AGCATCAGCACGCCGCCATCGACGCCCGGAATGTT 13076 31 100.0 33 ............................... GAATTCCGCGAGCAACTCCGCGATGTCGCTCAT 13140 31 100.0 34 ............................... GTGTCGGGAACCGGTGGTTCGTCGCAGTTCGGCG 13205 31 100.0 34 ............................... CACATCAGCGCATCAAAGCCGGCATTGTGCGCAA 13270 31 100.0 35 ............................... ACTGAGACCGCAGCCATGGCAAGCAAAGCCGACGT 13336 31 100.0 37 ............................... CGCGCCAAATCGACTGCATTCGCCCAACTAGCGAAGA 13404 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 13469 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 13534 31 100.0 34 ............................... TTTCAATGCCTCCTTTTGCAGTTCCTTGGTATCC 13599 31 96.8 35 A.............................. TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 13665 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 13731 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 13796 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 87 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //