Array 1 5389061-5386542 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJUN01000001.1 Streptomyces sp. PanSC19 Ga0299894_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5389060 29 86.2 32 A..C....................AC... CTGCCGGCGCTGGTGATGTACTTCCGCCGGGT 5388999 29 89.7 32 A....................A..A.... GCGGCCGTGGTGGCGTTCACCGCTCAGATCGT 5388938 29 96.6 32 ........................G.... ATGGCCGACTCCATGGGCCTGATCCCCGGCCA 5388877 29 89.7 32 ........T...............AC... CCGCTGTACTGCTGTATGTCGGCTTCGAGGTA 5388816 29 96.6 32 ........................G.... ACGTTCGCCTACACCCGCGAAGAGGCGGAGAC 5388755 29 86.2 32 ...........A......A.....GC... GAGTCGGTGCTTCCGCTGCGTCTCGCGGTGCA 5388694 29 93.1 32 .................A......G.... CCGATCGAGGGCGGCGTCGGCGACGAGGCCAC 5388633 29 96.6 32 ........................C.... GCGGTCCGGGTCGTGGCGGGGATCTTGCCCGG 5388572 29 93.1 32 .............A..........C.... TACGATGCTGCCGTGTCCGCCGTATTAAACGG 5388511 29 86.2 32 CC.A.....................C... TCGAGGTCGACATCCGGCGGGTTGATCCGCTC 5388450 29 86.2 32 C........A......T.......C.... AAGGTGCGACGCCTTAACGTCGTCGAGACAAC 5388389 29 89.7 32 TG..C........................ CCCACCAAGGGCAACTCCGATGGTGTAGACGG 5388328 29 93.1 32 .............A..............A TATGGCGACTGGGTCATCGTCGACCTGGGCGA 5388267 29 96.6 32 .............C............... GGGCCCACCATGGCAACACCACTTACCGCCGA 5388206 29 96.6 32 ......T...................... CGCCTGCGCATGATCTTCATCGGCGTACGGCG 5388145 29 96.6 32 ...........A................. ATCGGGGAGTCCGGGTGCCACGGACGCTCGCC 5388084 29 96.6 32 ........................C.... GTGCCGAGGTAGACGTCGGCGCTCGGGCCCGC 5388023 29 89.7 32 ...........A............CG... CCGTAGTTGTCGTGCTCCGGGGTGATCAGGCG 5387962 29 93.1 32 ...........A..............G.. TGGGGCGCCACGGTCGAGGACCGAGCCCGCCT 5387901 29 100.0 32 ............................. GGCGTCGACAACGGACGCCAGCTCGGCGCCTC 5387840 28 82.8 32 ...A.G.....A.........-.....T. GAGATGCCGGTCCTGGAGGCCGACCCCGTGGA 5387780 29 96.6 32 .......................A..... ACGACGACCGCGCACAACCCTCCCGCGCCCCG 5387719 29 86.2 31 .C.........A.A......A........ TCTGGGGGTCGCGGCCGTCGCTGCGGCGCCG 5387658 29 89.7 32 .....T................C.C.... ATGGGCGCAGGCAGGTCGTCCGACGGAGCGCC G [5387641] 5387596 29 93.1 32 .................A......C.... AAGCGGGCGGCGCCGGCCGTGAAGAAGCTCGG 5387535 29 72.4 32 CC....T.G....A......C...GG... TGGTCTCTGATGACCCAGGGGTGTGCGAATTT 5387474 29 82.8 32 CC...........A......A...A.... CTCGACATCCTGGATGTGCGGATGCAGTCCGC 5387413 28 82.8 32 CG.C.....-...............C... ATGTCGGCGAACTCGACACCGTACGCATTGCA 5387353 28 89.7 32 .............A.......-....T.. CAGCGCTGGCTGCGCTTCGCGCTGGGCGTGAT 5387293 29 96.6 32 ............T................ AACTCGGGGTCGGCCTGCCCGAACTCGTACTC 5387232 28 89.7 31 ......T..........A...-....... CCGCAGGTGCAGGTATCGACCGGGCGTCCTG 5387173 28 79.3 32 CC.......-....T..A......C.... GACAAGCTGGGCCTGTCGTGGCCCGCCACGGT 5387113 29 82.8 32 .C.A.........A..........C..T. GTCGTGGTGTCGGTCGCCTCGTAGTCGTAGGA 5387052 29 89.7 32 ..A.......T.T................ GTCAGCACCGTGACGGACATGGCCCCGCCAGT 5386991 29 89.7 29 .........A.A.......A......... TTCATAGCTTGCTCTTCGTTCCAGTTCAG 5386933 29 100.0 32 ............................. ACCGGCGCCCAGGTGTGGACCTTCGAGGCGGT 5386872 29 100.0 32 ............................. ATGACGCAGTAGTCGCCGTACCTGTCGAGCAC 5386811 29 93.1 32 ...........A.....A........... TCGATCATGATTCGCCTTGCCCTGGCAGCTGA 5386750 29 89.7 32 .....T...............A......T GTCGGCCGCTAGATCCCGCCGGGCATCGTCAA 5386689 29 93.1 32 ........T.G.................. TCGAAGACCTTCTCGGTCGCGGTGCCGGTGGT 5386628 28 89.7 31 .....T...............-......C CGGTCGCCGGGCTTCTGACCGGCGGACGCCG 5386569 28 82.8 0 ............G........-...AGG. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 90.6 32 GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : GCGACCACGATTCCGCATCGAGCCAGCCGACGCGGCGGAGGAAATTTCTCCGTCGATCCGGATCCGTCGCCCGCCCTGGTCATTGGGTGGGTAGATGACGACGTGCGGCTGATGCTCGGTCATGGGACCCACCCTGGAGCCGGATGGTCTGGACCGCATCCAGACCGGTCCGGACAGACGTAAGCCCCCGCTCCGGACGAAGCCGGACGGGGGCCTTCGTGCGGGCGCAACTACGACGCCTCCTCGATCACCTCGACGACTGCCGCGTCGCCGACCTCGCGCCGAACGCGCGCCCGGAAACCGTCGCGCAGCGCCTCGTCAGCCCACAGTCCCTCGTTAACGGGCAGGTGCGCCCACTTGAACCCGCCCTGCATGGCCTTCGTGGCGCACAGCGTTACCGTGCCCGGGGCGACGTCCGCCGGCATGTGCTTGTGCTCCGGCGGCATGGGCTACTCCCCCGGCCGCAAGTCGGTGCGCTGCCCCTGGCGAGACGTACGAGC # Right flank : ATCACAACTCGCGGTTCATAGTGGCCATAAGGGGGGCGGGGCTGAGCGGCTGTCATCCTTCGGTGCGAACTGCTCCCGCATGGCGGTCGCTCTTCGGAGCCAGGGACAAGGCCGACCAAGATCCGGGCCATACACGGACCAGCCGTCTGCAGCCTGGCCGAATCGTAGCCGTTTCCGCTGGTCAGCGGCCACATGAGGCGTGTACCACCAGCACACGAAGAACCTGCTGTTCCCTCAAATCCGGAGATCAGGCTGCTTCCCAGAGGCCGGCGTCCAGGATCCGGGCGGCCTTGGTGATGCCGCCCGGCATCAGGTGCCGGTAGGTGCGGTAGGTCTCCTCGATGGACTTGTGCCCCATCCATTCCGCGACGTCGGTGATGGGGATCCCGTTGCCGAGGGCATTGGAGGCGAAGTAGTGCCGGAAGCCGTACATCCCGACACCTTCCTCCGGCGGGAGGTCCGCGAAGAGCTTCTTCACCCGCCGCCGCTCCATGCCTTCG # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.10, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [36-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5395378-5392110 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJUN01000001.1 Streptomyces sp. PanSC19 Ga0299894_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5395377 29 75.9 32 CGC..........A.AT....C....... CTTCTGGATCCGATGTCCTCGAACCCAATCCA C [5395368] 5395315 29 96.6 32 .......T..................... TCTCTCGTTACGGTGGCCGCGAACTGCTCGCA 5395254 29 89.7 32 ....A............A..A........ ACCGCCACCGCTGTGTCCCTGGCCGTCGCGTA 5395193 29 89.7 32 ........T.T...G.............. TGGGGCGCCACAGTCGAGGACCGAGCCCGCCT 5395132 29 100.0 32 ............................. AACCAGATCCTGCCCGAGTGAGGATCGGTGGC 5395071 29 100.0 32 ............................. CGCGGGCCGCTGCTCGTACTGCGCGATGCCCG 5395010 28 89.7 32 ..AT.............-........... GCAAGGCGTGGCTGGCCCGGGTCGTCGGCCTC 5394950 29 89.7 32 .............A.A......C...... CAGGTTCAATCATCATTGGGAAGACCAACACC 5394889 29 82.8 32 .C.A...T........T.......A.... CTGCATGGCAGGAAAGACCGTCATCACCGTCA 5394828 29 93.1 31 T.......................C.... AGAAGGCGGTTGAGTACACCCTGGAGCGGGC 5394767 29 75.9 33 T..ACT.......C....T...C...... CTCCGTACCTTGAGAACTAAACAAATGTTCCTC ACG [5394741] 5394701 29 82.8 32 CG.T..............A...C...... CGCACGATCCGGCCGACCTACGCCTGGACCCA 5394640 29 89.7 32 .....A......T.......A........ GTGGGGTCCTCCAGGAGCGCCTTGATCGCCTC 5394579 29 93.1 32 .......T..............C...... ATATCCGGCAACTCCATCGTCACGCGCGATCC 5394518 29 86.2 32 A.A.....T..A................. CCCGAGGTGGTGGAGGCGTTCTCCACCCAGCT 5394457 29 89.7 31 ............TA.A............. CGGTGAAGCAGGGCCTTTCCGACCTGCCGAA 5394396 29 93.1 32 .................A....C...... TCGGGCACGTCGTCGCGGACGTACGCGTAGCC C [5394391] 5394334 29 89.7 32 AC......................C.... TCGTACGGGGCCTCGACGGCGCCCATGACGCG G [5394317] 5394272 27 89.7 32 ........T......--............ CTCCGCTCGATCGGCGACCTGCGGGTCGCCGT 5394213 28 93.1 32 .........A.......-........... CAGCAGGAGGCGAAGAGGGCCGCCTTCGAGTC 5394153 29 93.1 31 ..C..........A............... CGGCGAGGACCTGCCCGAGGACGATCTCCTT A [5394136] 5394091 29 93.1 31 .C.................A......... GCTTCTGGCGGACCTGGAGCACGGCGCCGCA 5394030 29 93.1 32 ............A....A........... GTGATGAGGAGGCGGTGGAGTCCGGCACCGAA 5393969 29 96.6 32 ...T......................... CGGACGTAGGGGCCGTCCTCGGTGTCCTCGGT 5393908 29 89.7 32 A..A....................A.... GTCCCCCAGGCCGCGCGCTTGAACTTCACCGT G [5393891] 5393846 29 93.1 32 .............A.A............. GCTGTCACGCACGCGGTCGTCTGGATCCGGCT 5393785 29 100.0 31 ............................. CGTCACCGACATCGTCGAGATGCCCGGCTGG 5393724 29 93.1 31 A................T........... GGCGGAGTTCGATGGGCATCGGGGCGTTGGG 5393663 29 96.6 32 ...................A......... GAGGCGGCGCAGGAGCTCGCCGACCTCGGCGA 5393602 29 96.6 32 .........................C... TTCTGGGTGCATGTGGTGCACCCTGAGGCACA 5393541 29 93.1 32 ........T.......T............ CTCACCTGGGTCAAGAAGGGCCGGGAAGGCCG 5393480 28 89.7 32 .............C..T-........... TGGCTGTCCCGCCGGCCGTCGCTCGGGCCGAT 5393420 29 100.0 32 ............................. TCCAGGCGGGCCTCCAGCGGCACCACGCGGAT 5393359 29 100.0 32 ............................. TACCCGGGCGTCCTCCGGCACGCGTTGCCCCA G [5393342] 5393297 29 96.6 32 ..........T.................. ACCACGGCCATGATGCTGAGCTTGCTGGACGC 5393236 29 100.0 32 ............................. GGGCAAGCCCGAAAGGGACAACCCGAGGTGAT 5393175 29 100.0 32 ............................. CGCACGGCTGAGCTCGGCATGGACGAGAACCA 5393114 29 89.7 32 ..A......A.....A............. GTCGACCGCTGCGCGCTGGAGCGCTTCGCTGC 5393053 29 86.2 32 ........T....A...A..A........ ATGGCCCGCGCACAGGTCCACGCCTATGACGG 5392992 29 100.0 32 ............................. GCGCACACGGGTGGCTCGGTCGTCCGGCCTTC 5392931 29 96.6 32 ........T.................... GTCGTCGAGAAGGTCACTGTGGTCTGCACCCC 5392870 29 96.6 32 ..........T.................. GCCAGCGCCCGCGTTGTCTGGCACACCACGGA 5392809 29 89.7 32 ...A.............A...A....... GCGTCCAGCAAGCAGTTCGCCGAGATCGTCGC 5392748 29 96.6 32 ............................A CCTTTCTTGTCCTTCCGCCCGGCGGTGTCTAG 5392687 29 89.7 31 ...AC......A................. CCACTTCGTCTTCGAGGGTCGGCCCGTGGCC 5392626 29 89.7 32 ......T...T......A........... GACCGGGCGGAGATCTTCCAGACCGAGATGGC 5392565 29 93.1 32 .....T.......A............... TGTGGGTACTCGGCCGGGAGGCAGGCGCCGCA 5392504 29 93.1 32 ...A....................C.... CACGGCGTGCGCCTGTACGCCGTCCTCGCGGC 5392443 29 96.6 31 ........................G.... ATCTCTCTCACGGGTACCTGTCGGTGCTCGT 5392382 29 89.7 32 .................A.....AG.... AGGACGTAGTAGGCGAGGGTGACGGCGGCGGT 5392321 29 93.1 32 ...........A............G.... CTGTCCGTCCCGTCCGTAGTCGAGGACGAGTG 5392260 29 96.6 32 ........................G.... GTGCCCTGCGGAGTCACTCCCGGAATCCGGGC 5392199 29 96.6 32 ........................G.... CTGATCGTGGACGGCCGTACGCAGACGGCGGC 5392138 29 93.1 0 .......................AA.... | ========== ====== ====== ====== ============================= ================================= ================== 54 29 92.6 32 GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CCTGCTCCAGAAGCGGAAAGCGGAAGGATCCACACCCGAACGCATCACCACCTCGCCGGGACGATACGAAGACCAACGAAGTTTCGGTCAACCGCAAGCACGCCAACATCTTTACGCAGTAGACTGCTTACCGCTGCACGCCTCCCTGAGGTGCGCGGAACCCCACTGGCTCTCCAGCCGGCGGCACTGTCGGGACAAACGCATGACCCTCCCGAGGGACGTGGCGCCCTCGGCAGTGTGATGCCACGTGGAGATACAGTGCCCCGGTTCTTGCCCAAGTTCGCCCTGCGTCGCGAGACCCTCCTCAAGGCCTCTCGTGTAGTGATCAGCACGGTACTCCGTGTCCTGATCAGCGAACTCGTCAGCTGGCTCATCTGAGCCACGGGTGACGGATCCCAGGGGTCCGTCACCCCTTACATGAGAACAATGCCCCATCGGCGGGCGATTCTCGGCAGCCCGCAGTCTGGATCACGGGCCACCTCCACTCCCGCGGAGGGAAT # Right flank : ACGCCACAGCCTACAACGCTGCCCGCCGCCAGCTGGAGCGCTCCCCCGACCAGCTCGGCACCCGCCCCGTGCCCATCAGCCTCCGCGTCCACGACACCATGCGCGCCGTCGAAGCTGCCCTCCTCGACACCGCCGCCTGCCTCGCCCGCTCCGTGCAGCGCCCGCCGGTCCAGCTCCCGCCGCCGGCCCGCGCCGCTACCGCCCGCACCCGCGGGGAGTGCCTCGTCTGGGAAGACCGGGCCCGCCGGATCGAGCAGGCCCGGCAGGACTCGGCCGACACCCGCCGGTGGCACACGACCAGTGCGGGGCGGACTGCGATCCGGGCCGCACTGTGGCTGTCCGGACGTGCAGACGGACGATCCGGACCGTTCCGGCCGCTGTCCGACACCGAGGAGCAGCACCTCGCCCGGGTCAAGCCCGCGCTCGACCTCTCGGATGTCCGGCGCGAGCTGACGGCCGAGCACCCGTGCCAGTGCGGCGGGACGATTGAGGTGTACGGC # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [31-58] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5406167-5403891 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJUN01000001.1 Streptomyces sp. PanSC19 Ga0299894_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 5406166 29 100.0 29 ............................. TCCACCGTCATCACCACGAACTACGTGGT 5406108 29 79.3 32 C...GGT.......C.........G.... GCGACGGGTGCCCATCGGCGGGCGATGCGTCA T [5406104] 5406046 29 93.1 31 ....G............C........... CCCCCACCGCGGTGCTGGGGGGCTTTGTGCT 5405986 29 93.1 32 ...C.T....................... CTGATCAGGGCCGATGCGTCCGACGGGCGCGA 5405925 29 96.6 32 .....................A....... CCCCGGTCCGCCCCCGACCTGAGCGCTCTCAT 5405864 29 86.2 32 ......A.....TA....A.......... CCGGACTTCGCCTTCGGGCACGAGATCGCGAA 5405803 29 93.1 32 ........T.............C...... GCCCGTGACTCGCGTTCAGATTCCTTACCCAC 5405742 29 93.1 31 ...................A......T.. GAAGAGATCACCAACGTCAGCACCTCGACGC T [5405737] 5405681 29 96.6 32 ..................A.......... CAGTACGGCCCGGACCACCCGCACACGCTCAA 5405620 29 96.6 32 ..........................A.. AGCAGGGGCGGGATATGTACCCTGCCCCTGCT 5405559 29 96.6 32 .....................A....... CCGGGCTGTCCTGCGCGGAGCCAGATGCCTCG 5405498 29 96.6 32 ........................G.... TACGCGACGGCGTCGTCGAGGTCTGCCATCGT 5405437 29 93.1 32 ...................A........A GTTCAGCGGGCCGGGACCGTTCACCGGGTCAC 5405376 28 93.1 89 .....................-......A CCGCAAGTGCAGGTATCGACCGGGCGTCCGGCTGGCCCCCGCGTACAGGGGTACTCCGTACGATGCTGCATGTCCGCCGTATTGAACGA 5405259 28 75.9 153 CC.AC.A..............-..C.... AAGAAGACGGTCGAGTACCCCCTGGAGCGGGCCTGGTTCCCCGGCCAGCGTAGGTGTTCCGCCTCCGTACCTTGAGAACTAAGCAATTGATCCTCCAGTCCCCCGCGAGCGGGGTGTTCTGGCGCTGGCCAACGTGACCACAAAGGCCCTGAT 5405078 29 89.7 32 CC......................G.... AACCTGGATCTACTGCACCGGAACCTGCGGCG 5405017 29 96.6 32 .......T..................... GGTCTTACGCGGCGGTGCCTGCCTCGGGGGCG 5404956 29 86.2 32 .................A...A..G...A CATCGGCGGCCCCAGCGCCGGGCTGCTCTTCT 5404895 29 93.1 31 .............A.........C..... AAGGCCATCGTCCAGACCTTGCCGGTGTGTC 5404835 28 86.2 32 A...-.............A.A........ CGGCTGCACCTCGGCATCCCGACCCGGCAAGA 5404775 29 93.1 32 ............T......A......... TGCATAACGTGTGTTATGCGTTTGCTCCGGTA 5404714 29 96.6 32 A............................ GCGCGGCCTCCGATCACTACCGGAACCGGTCC 5404653 29 93.1 32 .......T............A........ GGGCCGCCGAGGACGGGGTAATCGGTCCAGCG 5404592 29 96.6 32 ....................A........ CGCACGACGGTGCCGGTGCCGCTGTGGTCGAT 5404531 29 96.6 32 ...........A................. AAGGGACTGGTCGGCCCGGTCGAGGAGTCCGA 5404470 29 93.1 32 ...........T........A........ CGATCTTCGGGTTCGGGGTAGGTGCCGGTTCC 5404409 29 96.6 32 A............................ GGCGGCATGGAGGGCTCAGAGGGCACCGACTC 5404348 29 96.6 32 ............A................ GGTGGGGTGGGACTAGGGTCGCGCGGTTCGGC 5404287 29 100.0 32 ............................. AAGGTGTGGAGGCTGAACGTGGTCGAGACGAC 5404226 29 93.1 32 .........................C..T AAGGCGAGGGGGCGGCCTCGGCGGGCGCCGGC 5404165 29 93.1 32 ............G.G.............. GAACATGTGCCGGACATAGCCATCCCCCGAGG T [5404160] 5404103 29 100.0 32 ............................. AGCATGGCGGTGACGGGCACGTTCGAGGGCGG 5404042 29 96.6 31 ......................C...... AAGCTGAGCGACGGCGAACCAACGTCCCCAG GT [5404027] 5403980 29 89.7 32 ...........A.C......A........ TACTGGGCGCAGGCCCAGGAGTACATGTCACT 5403919 29 96.6 0 ........................G.... | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 35 29 93.3 37 GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CAAGAACCTGCTCAGGCGCCGCACTGCCGGTCGCAGGTCAGCAAGCGCAGACACCATGCGGACGCATGCTGACCGTTTGCTGACCTGAGGGGGGCACATGATGCCCCTGACCTGCGGCGACGCCAAATAGTCAGATCTTGGACGAGGAGATCCTCGCCCGCTACCGGACCGGGCGCTCCGCATCGGCCATCGCCCGCGAGCTCGGCGTGGACTGCAGGACGATCCTGCGCCGCATCCCCCAAGCCGAACGGCGCACCCACCTCCAGGCCCGGCAGCTGAACCGGCCGGCCCCCGGCATCGACGCGGAATCCGTCCGCGCTCTGCGAGCCCAGGGCCTGACCTGGGCCGCGATCGCCGCCAAAACCAACCTGTCAGTGAAAACAGTCCGCGCCCGCGCGTGAAGCGGTGCTGGAGCCGCATCGATCTCGACCAGCTGCGCAGCATCGCCACCGTCACCCAGACCGAGCTGTCCCCGGGCGGTCAAGGCGGTCCCCGCAGCA # Right flank : CGCGAGGAGGTAGAGGCCCTCACCGGCGGGCAGTGGCCCCCGCGTGGGCAAGGGGCAGTTGGCGCCGCAGTTCCCTGTGAACAAGCCGTGGGGGTCATCCCCACGCGTATGAACGGCAGGACTGCGAGACCGGCTGCCGGACGTCGGCCGCGAACACAGAAAGCAGCCGCGGCAGCGAGCACCCGGCCGCCTTGGCCCAGGAACCATATTCATGAACGCTGCTGTACGGGTGCAACTGTCAACATTCCGCACCCGTGTGCCTTGCCTCGTCCGATGCCTGCAGCGATCTTCTCGCGCAGCAGGTCGGCGTCGAGGACTCGGGCTGTCCCGTCGAATTGGGTGCGGGAGTGCTGGACGAGCTGCTTTGCGGTGCGGTTCTTGGAAGGTTTGTAGCCGCTCACCTTGGCGAGTGGCTGAGCGTCGATGTGCAAGGGTTCCAGGCCGGCTGCGGTGGCCTGGCGTTCCCACCATTCGACTGCGGCATTGCCGCTCAGGGCGAC # Questionable array : NO Score: 5.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //