Array 1 4254-4955 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEQ01000064.1 Salinivibrio kushneri strain ML318 scaffold64.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================================================================== ================== 4254 28 96.4 32 .............G.............. GTTAGTCAACATGGCTCCGAACTATGGATCTG 4314 28 96.4 32 .............G.............. TCGCTCGATGCGCTGGCTCCAATGTCAGATAC 4374 28 100.0 32 ............................ TTTTGCCGCTTCTTGCACGCGCCGTGTCATAC 4434 28 100.0 32 ............................ TCTTCGCCCCAAAGCGAAACGGCGGACTTACT 4494 28 100.0 32 ............................ GAGTGGAGTGATTGGAGAATGAGCGGTAAAAA 4554 28 100.0 32 ............................ GAGCATGGCTTGCAGCTGATCACTGTTCAGGT 4614 28 100.0 32 ............................ TCATGCGCGATGGCGGCACTTTCGCCCATTTC 4674 28 96.4 32 .............T.............. ATCGAAAATTTGTAATTAATTGCGGTGATTAA 4734 28 82.1 165 ...........G.........G...GTG ACACAAGCCCCAGCACGATTTTGGATAGGTGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCGGTGCAACTGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCAAGCTTGTATGATCGAGTTGGCGCTT 4927 28 85.7 0 ..C...CTA................... | G [4931] ========== ====== ====== ====== ============================ ===================================================================================================================================================================== ================== 10 28 95.7 47 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCAAGACTATGCCTACTTTAAACGTTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGATCGGCGCGCGGCCGCGATTGCCAGCAAAAATGGCTACGATGAGGTGGAAGTAAAGCGTCGTTTGTTAGAAAACATTAAAACGGACGACAAACGCTGGTCACTGCCTTTTATTCAAGTGACCAGCCTGTCGAGCCAAAAACGAGCAGGGCAGCCAAATACCGAGTTTGCTTTGTACATCGAGCGGGAAACAACCAAACAGCCGCCAAACAAGGACCAACCGTTCACCTGTTATGGGCTCAGCCGACGAGAACCCGATCAGCAATCAGCGGTACCGTGTTTTTGAGGGGGAAACCCCTCTTTACCCCTTCTTTTGGGGCTCTTTAAAAATAGACAGGAAATACAGTTAGTTACGGCAGGCCATTTTTAACAAGGGTAAAAGGCGATTTTTATCCTAATGGCCTGTTGTACCTGACGATTATTACGTTATTCTATT # Right flank : AAAGCTTTGCAGGTGTTCCGCCGCTTTGAGCTTTCCTCCTTTCCTCTGTTTCTCCTACCGTTGACACCTGTCTGGGTTTTTCATAGAAATGACTAATTTGGCATGCTTCTAGGTGGTTAAACTTTATGCCCTGACTTTAATCGTTGAATATTTTCTATCGATCAATCAAAAACTAATCGACGGGGAGACTACTCCTGTCTAGTTCTTTTTAACCGGTGGCAAGAATCTATTCTACGATAAGAAAGTAGCGATTTTTGGTCGATGTTGTCTGTTGTTGACTGGCAGGAGTTGGGTATGAATATCAATAACACCATGAAGTTAGTGTTTTTTATAATTGGGGCAGGGATTGTCGTTAGTTTTATAACGATTATTCAACTCAACGGCCTAATGAATAAAGTCGATGAGATGGCTCAGGTGCGATATCAGTCGTATCAAACGGCTGATGAATTAAGGCAAAGCTCTGATGACTTGACCCGCTTGGGGAGAACGTATGTGGTGAC # Questionable array : NO Score: 4.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.45, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCAGAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25205-24882 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEQ01000036.1 Salinivibrio kushneri strain ML318 scaffold36.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 25204 32 100.0 40 ................................ TAAGACTCAAAATATCCTTCACAAGGCCAAAAGCGTTTCG 25132 32 100.0 41 ................................ TAAGACCGTAATTGAGATACCGTCTTTGAGGCGACTCTCGT 25059 32 100.0 40 ................................ TAAGACGGTAAGGGTTGGGTGCCTGATCAAACGGATTGAT 24987 32 100.0 42 ................................ TAAGACGGAATGCGTCTTTACCTACAATGTAATTTTCTTTTT 24913 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================== ================== 5 32 100.0 41 GTCCTCACGGACCACGCCCTGACTAAAGGGAT # Left flank : ACAATTTTACCCCAAGTGGTTTGCGTGGCAAAAAAAGCGGCGTCCAGCATTACGTCGGTTGGCGCGTCTTTGTCGTTATGCTATGGAGAGGGCGTAATTTATGGATAAACCCCTATGGTTAATCAGCTACGATGTGAGCCATCCCAAGCGGCTACGGCGTATTTATCAATATTGCAGCCAGAACGGTTGGCCGTTACAAAAGTCCGTGTTTGTGTTTGCGCTCAATAAAGCGGAAAAAGCACAGGCTTGTCAGGAGCTTATTGACTTGCTTGACAGTGATGAAGATAAGCTATTGTGTATTCCTTTTAATCCCACCGCGGGCAGCTTTCATCTGATGCCGCCCACTGACCTGGTGATTGCCCATGATGATCCCCGCTTAGCTCGGTTCGTTCAATAACACGGCATGGAATTTGCTTGATTTTAAAAGTTATCCACTGTTTAAAACGCCTGTTTATTTTGCGACTTGCAAAGGAAAAAACAATCAGTTATAAATAATAATA # Right flank : CGATAGGAAGGGCCTAGGTTATAGAATCTTAGGCGCGAGGATCGTTAGCGGTAAAAAAGGCCACATGGTAAACCATGTGGCCTTTTGCGTGTTCCCGTCGGCTAAGTCGTCTAACGGGTCGCGTTTTTATACTGAATATTGCCAGGCGCAATCGTTAGGCCTTTATACACATAACCCGCTCTGTTGACTTTCCGCTTGTGCACATTATTAATGGTATAGTACTGGCCTAATTTCTTACCCAGCTTGTCGGTGATTTGCTTGTTGGTCTCTTTTAACAAGCGATTCCATAAATTTTTGTGCCGTTTTCTCAGCTCATCAAGCGGTCGCTCTAAGTCGCTGTTGAACAGAATGTCTGTATCTTTTCCATCGCCTTGGAACAACCAGCGCTTGCGGGCTACGCCCGAATCCGTGTCATATTTTACGATTTCCTCTGCGGTTTCTTCGGCGAGCTCTACCCATCTCACCAGATCCCAATCGTCGCGCTCGCTTGGCAATGCCGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACGGACCACGCCCTGACTAAAGGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 29450-28348 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEQ01000036.1 Salinivibrio kushneri strain ML318 scaffold36.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 29449 38 100.0 35 ...................................... TTTTGCACGACGGTAAAACTCTCGGATCTTCTTAC 29376 38 100.0 35 ...................................... TACCCCTCTTGGGATTGGAAACGGTGAGCAACCAA 29303 38 100.0 34 ...................................... AGAAGTTCTCTACAGTATCGTTCAGGTGAGTATC 29231 38 100.0 34 ...................................... CGAAGCTATTACGTGACCGTGTAAATGGTGTGGT 29159 38 100.0 36 ...................................... CAGATTGTGGTTCCTGCGTATGTTTTCATAGCTTTA 29085 38 100.0 33 ...................................... TGTACCGTTCGAATACTACTAGATTGTCGTTTT 29014 38 100.0 34 ...................................... CGAAGTCGACTATTATCTTCATCGTCAGATGCAT 28942 38 100.0 33 ...................................... GATATCGGAAGACCAATCTGACACTGAGATGTA 28871 38 100.0 34 ...................................... CATAATGCCATCTGGATAGTGAATCGTGATTTAG 28799 38 86.8 34 ..............T........G.........G.T.G GTAGCGCCTAGGTCCTAGACTCCTAGGCCCTAGG 28727 36 76.3 34 A..T.G.T--TT..T....................... TTATTTGCTCGTTTAGTTGCTCAAACTCTGGCTT 28657 38 89.5 19 ..............T..................G.T.G GTAGTGCCTAGGCCCTAGG Deletion [28601] 28600 36 76.3 34 A..T.T.T--TT.......................A.. TCTATGCGCGTGTCCTCAATGACATTAAGGAGCC 28530 38 97.4 35 ..............T....................... TGAATGCGTCAACACGCATCGCTGAGAATACTGAA 28457 38 100.0 34 ...................................... TCCGCGTCAATGATGTTTTAACGCTTCTCGGTGG 28385 38 84.2 0 ..............T.......TC.........G.T.G | ========== ====== ====== ====== ====================================== ==================================== ================== 16 38 94.4 33 GTCCTCACGGACCACGCCCTGACTAAAGGGATTAAGAC # Left flank : ATTTATGTGGGGAATGATCAGATTGTCCATTTAAATGGCGACGGTCGAGTCGAAGCCGTGTCGCCGGCGCGTTTTTTACAACGCCTGGGTGGCTTTAACCCAGCGATCAGTATTTATGTTTCATGCCGCGATAAGCAAGCCGTCGGCTCACCGGCGGCTGCCGCGCAGGCGATGCAGGCGATAGGCAAGCGTCAAGACTACAATGTGCTGTTTGACAACTGTCATCAATTTTCGTCATGGTGTTTGTCTGATAACCGTGCAAACAGTGACAGTTTTACCTGGATGCTAAAAGACACCGCTAAGGCGCATTTGCACGCCAATACCTGGCGCGTGTGGGATTGGGAAGATTAAAAATAAATCAATAAGCCGCTCAGTCGCTTACGCGCGGGAATAATAAAATGGCACGTCATTTGCTTATTTTGTTAAAATTAAGCGTGTTTAAAACGCTTGTTTATTTTGCAACTTGCAAAATTAAAAACAATCAGTTATAAATTGAAATA # Right flank : GCAGTGCCTAGGTCCTAGAACCCTAGGCCCTAGGATCTTTATTTCGTGCCCTGACGAAAGCGAACCTCCTTGTGCTTGATTTTTCTGCCATCACCAATTGGTGATCCGTGCGCTGGCGTCGAATAATCGATAAGATTATCCTCATCAGTTGCCCGCGATACTGGGCAGCGTTTAGCGACCCATTACCTCAGCCCCATAAGGAGATGCCATGCAACACGTCCATATCAATTTGGTCTCGAACCAACTGCTCCCGAATCTTATTCCCGCACTGGGCGACAACGCCTGCACGCACGTGATCCTGGTGCTTGGCGATCACACGCTCAAAGCGCGCGCCGAGGCGTTAGCCGATATGTATCGTGATCGCGATATTGAAGTGACACTCTTTGAAGGCCGTAGTAGTCATGATGTGGCGGCGCTGAAACAACAAGCGCGCGAGGTGATCGATCGTCTCAGCACCGAGTTTGCGGATATGCGCTGGATATTGAATGCCACCGGCGGCA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCACGGACCACGCCCTGACTAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 6703-5894 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEQ01000067.1 Salinivibrio kushneri strain ML318 scaffold67.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6702 28 100.0 32 ............................ TAAAGGGCCCGCTGCAAAGTTAAAACTCGATG 6642 28 100.0 32 ............................ GTCGACTGACAACCAGCTCATACACAAAAAAG 6582 28 100.0 32 ............................ GTTAAAGATGCGCAACACATCTATGCGATTGC 6522 28 100.0 32 ............................ GGTAGGTAGGTGACGACCATCGCGTAAATGCT 6462 28 100.0 32 ............................ TGACCGCCTTGCGCCTTGGTCGCGGTGTCGTT 6402 28 100.0 32 ............................ ACTTGGGTGTCGATATCGACCTCGAAGTTACC 6342 28 92.9 32 .............T...........G.. GTACATCGCTTCATCAGTGATGCGAGGTTTGG 6282 28 100.0 32 ............................ ATCACGCGATCCTTCGTAAGTTATGAAACTTA 6221 28 100.0 32 ............................ ATAATCACCGGATATGGCGAGCAAATAAGCAT 6161 28 100.0 32 ............................ ACTCTTTAAGCTCACGCTTCCACTTCAACAGT 6101 28 100.0 32 ............................ ATAGCGCAGCCGGAAATATCATCCCCGTCACA 6041 28 96.4 32 ...A........................ TGCGAAAAGTACGGCTCGATGCTTTCGCCGTT 5981 28 96.4 32 .............T.............. ATCGAAAATTTGTAATTAATTGCGGTGATTAA 5921 28 82.1 0 ...........G.........G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCGCGCCATACTTTGAAGCTCCGCGGTTTTAATTCACTTCGCATTAACGCAATCACATCGTCTTGGCATAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTGCTGGTGGCCAATAATACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGTTACCCTTGTTTTTGGGCTCTTTAAAAATAAACAGCAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGAGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTTACTGACGATTATTACGCTATTCTAT # Right flank : ACACAAGCCCCAGCACGATTTTGGATAGGTGCACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGGGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCGCGGCGCAAATCACACCAAGTTTGTACGATCGAGTTAGCGCTTGTCCGACCTACGCACAGGCAGCTTAGATACTGAAATAGTTGCTTTTTTTGATGCCAGTTCATTGTTGGTGGGTCGTGGCATGGAGGAAGTAGGGAGGGGATGGTTCAATATCGACAAAAGCGTATGACTAGCAATGACCATACACGTCAATTTGACGCATGTTTGTAGCCAAAGTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //