Array 1 698417-706375 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016355.1 Lacticaseibacillus paracasei subsp. paracasei strain TMW 1.1434 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 698417 28 100.0 33 ............................ CTGGGGTAGCACAGGTAGGTGCGCTCGAAACAA 698478 28 100.0 33 ............................ CTGCTGACCCAGCAATTGCATAGTAGTAGCTAT 698539 28 100.0 33 ............................ CAACTGCGGATATTTGTACGTTGCTTTGTCTAA 698600 28 100.0 33 ............................ TCCACTGTAGCTTGTCTGTGGTGGCTTCTGGGG 698661 28 100.0 33 ............................ CGTATGACCTTGCTTGGCTCGGTTTTTCAGCTA 698722 28 100.0 33 ............................ CTATATTCTTCACCCTTTACCCCTCCCGAAGTA 698783 28 100.0 33 ............................ CAGACTTTTGATGTTGTTGAGTGCCGTACTTTT 698844 28 100.0 33 ............................ CGTCAATCTTTCGCGGTTGCTTGAGTCTGCTTT 698905 28 100.0 33 ............................ TAAAGCTTGCCAGCCTTGCTTAGTTGGGACCTT 698966 28 100.0 33 ............................ TACACCCAAGACGATCCCCGCTTGCAACATGCT 699027 28 100.0 33 ............................ TGATACCGACCGGAGTAGCTGAGGTACCGTGCC 699088 28 100.0 33 ............................ CAGATCAGTGAAAATGACGCAAAGGCCGGCGAT 699149 28 100.0 33 ............................ CGAATATCAAGCCCAGTGCGAGATTGAGAAAAC 699210 28 100.0 33 ............................ CGGCTACACCGTGGCAAAGGAGAAGAAATACAA 699271 28 100.0 33 ............................ TGGACTAAGTAGCTAACTGGAGCTATTTAGTCC 699332 28 100.0 33 ............................ TGACCAAATCCAGCAAAGAAGTCGAAAAAATAG 699393 28 100.0 33 ............................ CGTATTTTCGTCCACATTCATTGTATAAGGTGT 699454 28 100.0 33 ............................ TGAAGACTAAGAAAGGTAACCCGCTTCGGCGGG 699515 28 100.0 33 ............................ CTTGCTGACGGTAGTAGTTTGGGTGAGACTATT 699576 28 100.0 33 ............................ CTTGCTGACGGTAGTAGTTTGGGTGAGACTATT 699637 28 100.0 33 ............................ TCCGTGTGCCGATATAATGGGAACGCCAGCATT 699698 28 100.0 33 ............................ CAGAATTAAAATTAATGGCGCCAATCTTATCAA 699759 28 100.0 33 ............................ CAACGCTAGACGACGCAACTCAAGAACAAGTCG 699820 28 100.0 33 ............................ TATGGCACGCTTGATGATCTTTGGCCAAACCAA 699881 28 100.0 33 ............................ CTGGTTCAGATGGATAGGTCCCAGCATTAGGCA 699942 28 100.0 33 ............................ TGGTGTCGGTATAGTATTCAGGATCAGCTGGGT 700003 28 100.0 33 ............................ CTCAAACCGACCGACTTCAGGACCGCTCGTATC 700064 28 100.0 33 ............................ TATATACTGACTGATTGCCCACTGGTACATTTG 700125 28 100.0 33 ............................ CAAGAAGATTACCGGTAATGACTACGTCGCCAG 700186 28 100.0 33 ............................ CTAAATCCATTCAGCAAAAACACGTCACCAGCG 700247 28 100.0 33 ............................ CGCCAACTCACGGCCACTAGATCGTTGGACGGT 700308 28 100.0 33 ............................ CGGTGTCGCAATGCCTAGCTGGGTTCAGGGCAA 700369 28 100.0 33 ............................ TAATGTGCCAGTGGGAGCAATGGTGTTGTCGAT 700430 28 100.0 33 ............................ TGATCACCCCAGATCAATACAAGCAAATTACAG 700491 28 100.0 33 ............................ TAATGCTAGTGTGGTTCTCGTAAAGACCATCTG 700552 28 100.0 33 ............................ TGGTGTCGGTATAGTATTCAGGATCAGCTGGGT 700613 28 100.0 33 ............................ CTCAAACCGACCGACTTCAGGACCGCTCGTATC 700674 28 100.0 33 ............................ CGAAACCGTTGGCCCCTATAAAGCTCCACAAGC 700735 28 100.0 33 ............................ CAAGCTAACCTTTCGCCTAGATCGTCTTGATTT 700796 28 100.0 34 ............................ CAAAAGTCTGAACGCGTTTATCATCTCGATTTCA 700858 28 100.0 33 ............................ CCATAGCGGCGTCAACATTAGTACGCTCAATCT 700919 28 100.0 33 ............................ GGGGATGACTGTATGAACGAACGCAATGAAAAA 700980 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 701041 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 701102 28 100.0 33 ............................ CTAATGTTACTGATATTTTTATCAAGCCATTTG 701163 28 100.0 33 ............................ CACTTTGTATTTTCCAGCCATTTCCCACTTCAC 701224 28 100.0 33 ............................ CGCTGTCTTGCCTCACGCACAGTTTCAGCAGCC 701285 28 100.0 33 ............................ TGGAGATCAAGATGAGTATTATGCATACGTTGG 701346 28 100.0 33 ............................ CGACTGATACTTCTCTGAACCGGTTCATTTGTG 701407 28 100.0 33 ............................ TGCCATTCCACAGTCCGCTGAAGAATGAAGCGA 701468 28 100.0 33 ............................ AGCACAGACGCCGAAGGGAAGCATCGTTGCTTT 701529 28 100.0 33 ............................ CAAGCCATGAAAAAAGCCGCTGGCCCGCATGCC 701590 28 100.0 33 ............................ CACACGATGACGAGCTTGGCAGTCACTCGGTTA 701651 28 100.0 34 ............................ CCTCTGCCCAGTCACCAATCGTGTATCCAAAAAA 701713 28 100.0 33 ............................ TGATCTTCGCAACCGTGAAGGGATTTCAATCAG 701774 28 100.0 33 ............................ CATTAGACGCCGGAACAGGCTGTGAATTTGTTG 701835 28 100.0 33 ............................ CAAACAAGCGGTGACAACTAGCTTGCGTGTGGC 701896 28 100.0 33 ............................ CGCGTTGGGATTGATCCATGGGAGCTTATTCGG 701957 28 100.0 33 ............................ TAAAATCAGAGATCACCCGACACACACAGCACT 702018 28 100.0 33 ............................ TATATACTGACTGATTGCCCACTGGTACATTTG 702079 28 100.0 33 ............................ CAAGAAGATTACCGGTAATGACTACGTCGCCAG 702140 28 100.0 33 ............................ CTAAATCCATTCAGCAAAAACACGTCACCAGCG 702201 28 100.0 33 ............................ CGCCAACTCACGGCCACTAGATCGTTGGACGGT 702262 28 100.0 33 ............................ CGGTGTCGCAATGCCTAGCTGGGTTCAGGGCAA 702323 28 100.0 33 ............................ TAATGTGCCAGTGGGAGCAATGGTGTTGTCGAT 702384 28 100.0 33 ............................ TGATCACCCCAGATCAATACAAGCAAATTACAG 702445 28 100.0 33 ............................ TAATGCTAGTGTGGTTCTCGTAAAGACCATCTG 702506 28 100.0 33 ............................ TGGATTGAGCTGTACAAATCTGGTAAGCATTCT 702567 28 100.0 33 ............................ TGCCGATTTGCAAACGATCGAGCGGTTCTCCAA 702628 28 100.0 33 ............................ CCGTGGTTCCCAAGCTTTTTTGTTTGCCATTTT 702689 28 100.0 33 ............................ TCAAAGCCCACATTAACAAGGTTGCCATGACGA 702750 28 100.0 33 ............................ CAACAACCAACCTTGCCAAACTTGAAAAGCAGG 702811 28 100.0 33 ............................ TTGCGCCCATGTCTTTGCAAGTTTTGTCATAGC 702872 28 100.0 33 ............................ TAAGATTGTGACGTCCGGCAGTATTTATGATCT 702933 28 100.0 33 ............................ TGACAACAGTCAGGTGACGCATACCGAACTCAG 702994 28 100.0 33 ............................ CGGCAACGGCACCTCTAACATCTGTATTACCAA 703055 28 100.0 33 ............................ TACCAGCATCCTCAGCAGTGAATGTGTCCTCAC 703116 28 100.0 33 ............................ CAAAAACCCCACAATGTCATCGTTTAACCAGTC 703177 28 100.0 33 ............................ CGGGTAGTTGAACTGATTGACCGCCAGCAGTGA 703238 28 100.0 33 ............................ CATCATCGGCAAGCTTGCTGACAAGAACGAAGA 703299 28 100.0 33 ............................ TGCCTTTTTACGGTTCAATGCGGCCATAGAGCG 703360 28 100.0 33 ............................ CGGTCCCGCTAAGTTTACGTTCGACAAATGGCG 703421 28 100.0 33 ............................ CATCTCTTCGAACCCCAAATACAGCGTCATTAC 703482 28 100.0 33 ............................ TGACAAATAGATATTTGCAACGCTTGGACAAAC 703543 28 100.0 33 ............................ CCATCGCTTGCGCCAATCGTGATTTAATCGTCG 703604 28 100.0 33 ............................ TTTATTAGAACTAGCTGAAGATGGAACAACTGA 703665 28 100.0 33 ............................ TCACCAATGGTACGTTCTGCTTCATTCAATCCA 703726 28 100.0 33 ............................ AACTCGGGGGAAATATAATCGTCACTGGCGTCA 703787 28 100.0 33 ............................ CAATCAATTCGCCAACCGTTAATTCGCCATTCA 703848 28 100.0 33 ............................ CGAGCTGCAGGACTACTCACGATGGACGAATTA 703909 28 100.0 33 ............................ TGGTTGATCCGGCCGCTTATGTATCCGCACGGA 703970 28 100.0 33 ............................ CAGTTCCTACCTGACTGTCCCACCAAGGTGCCG 704031 27 96.4 33 .................-.......... CGCAACCGCCGGGATTTGAACCCGATAAGGCCA 704091 28 100.0 33 ............................ CCATGCACGGGCAACGGCTACTTGGTTGTCAGC 704152 28 100.0 33 ............................ CGAACGTAACAACGTGGCCACCATGTTTTCGCG 704213 28 100.0 33 ............................ TCGAAAGAGGTAGAAAACATGAAAACAGCAAGC 704274 28 100.0 33 ............................ TCCTAAGCTGGCTTTGTTGTTAGGCATTAAAAA 704335 28 100.0 33 ............................ CAGGAGGAACCATCATGGCAGAAGAAACACAAA 704396 28 100.0 33 ............................ TACATCAACAAAGAGTATGACGTCAGCGGCACC 704457 28 100.0 33 ............................ TGACATCATCACACACAAGGAGCCATACCAAGC 704518 28 100.0 33 ............................ TTATTGTCAAAACCACCGTAGTTTTGGCCTGTT 704579 28 100.0 33 ............................ TGAAATATCGTAAGAAGCCGGTTGAAATTGAAG 704640 28 100.0 33 ............................ ATCCTTACCTTTAGCAATGCTAATCAGCATAAG 704701 28 100.0 33 ............................ CAACTGGCGTGCTCGCTCGTGCATGGTGGGAAG 704762 28 100.0 33 ............................ CGACTTGGACGCGCTCAACTATGATCTTTTCCT 704823 27 96.4 33 .................-.......... CCTTATCGCAAGTAATAGGTACCATATTAAGTT 704883 28 100.0 33 ............................ CAGCTTGCGCACACAAATGACAAATGCCGAAGC 704944 28 100.0 33 ............................ CAACTCGCCTATATTCTTCTACTATGGCGAAGA 705005 28 100.0 33 ............................ CAGTGCGGCGAATAATAATACCAGTCCGGCAAG 705066 28 100.0 33 ............................ CACCGTTTTTGCAAATGGTCAATGACGGTTTCA 705127 28 100.0 33 ............................ CAACGTTTCGCGTAATCTTAGCAAACACTAGAT 705188 28 100.0 33 ............................ CTTATTATATTTTGGAATGGCGTGCCGAGGTTT 705249 28 100.0 33 ............................ TGCGATTCACGAAGATTTTTATTTTGAATAGCA 705310 28 100.0 33 ............................ TAACTTTCGTCCTATTTCTGTTCCTTCAGTCAA 705371 28 100.0 34 ............................ CGAAACTGGTTGGTTGACGTTCTCCTGGTTTCCA 705433 28 100.0 33 ............................ TGAGCTTGTTAAGGACGACCCAGTTACCATCAA 705494 28 100.0 33 ............................ CAATCTGGTTAACTACACCATCTTGATTGATAT 705555 28 100.0 33 ............................ CTCAGGCAAGTTATCTGGCAAAAATCCAGATCG 705616 28 100.0 33 ............................ TTTATGAGTATCAGCCAGCACAAAACGCAATGG 705677 28 100.0 33 ............................ CAAGGCCGCTTCGCATTCCTTGACTTATGCACT 705738 28 100.0 33 ............................ TGTAATCAATTGCTACTAAAAATATTCGGAGGT 705799 28 100.0 33 ............................ CTGCTATCCGATCGTGGTCGACCCACGTACAAA 705860 28 100.0 33 ............................ CAACAACCGAATGGAAACCCTGAACAACAACCG 705921 28 100.0 33 ............................ TGAAATTTCAACGCTGTCCAGAACTTTGTCATT 705982 28 100.0 33 ............................ CTCGCAAGCGACAACCGGCAAGAATCTTACATC 706043 28 100.0 33 ............................ CGCAAAATAGGCCGCAAATATTTAGAATAAAGG 706104 28 100.0 33 ............................ TTGTCGCCATTCTTTGACGGAGTTTGACCCCGA 706165 28 96.4 33 .......G.................... TGTTACGTTCGATCCTGATGGTAACGTTGGTGA 706226 28 100.0 33 ............................ TGCGAAAGCCAAAGCGAACAACCGCAAAAAAGG 706287 28 100.0 33 ............................ TAAAGAATAAAGGAAAAAATATTTTGTGTTCTA 706348 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 131 28 99.9 33 GTTTTCCCCGCACATGCGGGGGTGATCC # Left flank : GAACGAGATGCAATTATTGCCATTGGGGCGGTAAAAGGACCGTCAGTTAACGAAACCGAAAAATTCACTACCTTGGTGAATCCACGAAGGCCGCTTCCATCAACGGTTGCCAAGTTGACGGGATTGTCGGCGGAGGAGTTGGTTGCCAATGGGATCAGTCTGAGCGAGGCAGTGCAGGCCTTACGGGATTTTACCGGCTCGCTCCCTTTAGTCGGATATAATCTGCGTTTCGACATGGGATTTCTTTCGGCAGCGGGTCGTGAAACTGGGTTAACGTCTTTTGGGAATCATACTTTTGATTTACTACCGCTTGTTAAGAAATCCAGTCGCTTTCTGGATAATTACAAGCTTAGTACAGTGCTGGCACATTATCAGATCGATAACGAGCAACCGCATCACGCGTTGTCTGATGCGACGGCAACAATGGCACTGGCGGACAAACTCATAAAAAAAGGAATCTTAACGATTGGCAAACGTTGATGGGATAGGGATTTTTTAGT # Right flank : CCAGTAGCCTCTTGGCTAAAATAGGCTTTTATTTGTTTTCCCGGTTCTGGTGCAAATTTTCCTCGCTGACTTGATTTTAGTATACTGGGTGCCAAGAAACGAGGGATTGCGCGCATGAATCACTTTAAGGGACGCCACTTTCAAAAGGACATCATCTTAGTAGCCGTTGGCTACTATTTCAGATTCAGTCTCAGCTATCGTGACATCGTTGAATTGCTTCGGGATCGGGGTATCACTGTTCATCACACCACGGTCATGCGTTGGGTTCATCACTATGGCCCCATCTTTAAGGCTCTATGGCGTCGGCATCAAACAGCTCACGCTAAAAGTTGGCGAATCGATGAGACCTATATTCGAGTTAAAGGCCGTTGGGCCTATTTGTATCGCGCTATTGACAGTAACGGTTTGACCATGGATTTTGAGCTACGAAAACACCGCGATTATACCGCATCCTATCACTTTTTGAAGCGTCTCTTGACGACCAATGGTCGGCCTGATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2310132-2308644 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016355.1 Lacticaseibacillus paracasei subsp. paracasei strain TMW 1.1434 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2310131 36 100.0 30 .................................... GACACATTCCGATGACACCAAGACACATGG 2310065 36 100.0 30 .................................... TAACCAATCTGCAAAGTGTCGGGTTTGACA 2309999 36 100.0 30 .................................... CGACTTCAAAGCTGAATTGATTAAGCGCTA 2309933 36 100.0 30 .................................... TCGTTGATACAAAAGACACTTACAAAGATT 2309867 36 100.0 30 .................................... GGGTGATGCTGACAAGATCAAGGCGGCTGT 2309801 36 97.2 30 ................C................... AAGTCTAAGCGATGCTGAGAAGGTTGAGGT 2309735 36 100.0 30 .................................... TATCAGAGGCTTATCCATTAAACAACTGGC 2309669 36 100.0 30 .................................... AAACTGCCTTCCGTTGCGATCAACTCGCGC 2309603 36 100.0 30 .................................... AAGCGTTCGCTTGCGCTGGTGTTGGTCTCG 2309537 36 100.0 30 .................................... ACATGAATTTAGATGCGCGTATTAGGATTT 2309471 36 100.0 30 .................................... CTGCTGTCGATTCGTCTAGTGATGCTGTTT 2309405 36 97.2 30 ...................................T CTTTTATTCGGTTCACGTTGATATTTCAAA 2309339 36 100.0 30 .................................... TAGCTTTATCAAGACCAACGCCACCAAGAA 2309273 36 100.0 30 .................................... CTCATCGGTCCTAGCTTTTGACAATCTCTT 2309207 36 100.0 30 .................................... CTACTTCAAAGTGAAGCCCCCCTACCAAAA 2309141 36 100.0 30 .................................... TTATCAAGAAAGTCCAGCCACGGCCTCGGG 2309075 36 100.0 30 .................................... CGCAGCAGGCATGAGCATCGTGCGTGAGAC 2309009 36 100.0 30 .................................... TTTACAGAAACACCACCTAACTTTGCTGAT 2308943 36 100.0 30 .................................... GACCAAAGCATTGCAAGATCTGTCTGATGA 2308877 36 100.0 30 .................................... CAAAAACAGATTTGATCGCTTCGCCAAAAT 2308811 36 100.0 30 .................................... CCGGCGGTGTTGGTGTAGGGGGTTCCGCAT 2308745 36 100.0 30 .................................... TGACGATTTGGTGTTATCCAAAAGCCGACA 2308679 36 83.3 0 .......................C.....A..TTCT | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.0 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTTAGTCATTATTTAAGTGCCAGAGACTTTTCGTCGGTGACTGAACAGATCGGTGATACTGAACTTCAAGTCGTTCTCATCGAATTCTCAAAGGTGAACAGAAAGAAGTACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGACAATCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACAG # Right flank : AAACAGCAGTGATATTAAATTTAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGGTCGAGCTCTAGTTCGAGCAAGAGCAGCAGTAGTACGACCAGTCAGACGAGTAACGCTAAGGTGAAGATCAATACCGGCGCTGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //