Array 1 73862-78518 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALMO01000003.1 Streptococcus suis YS39 Contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 73862 36 100.0 30 .................................... GCAAACTTTGAAAATAATTTGGGGCAGATT 73928 36 100.0 30 .................................... TTCGCCCAACACTTCTTCAAACCAAAACAT 73994 36 100.0 30 .................................... TTTGACTTTGATAATTTATTTATTACAAAA 74060 36 100.0 30 .................................... TTAGAGTAATATCAGCTCGCTATATGTTCA 74126 36 100.0 30 .................................... GTCCGATAATAAACACCCGCTCTCGGTTCT 74192 36 100.0 30 .................................... GTCGATGTTATCAATTCAATCCGTGCTCTG 74258 36 100.0 30 .................................... TAAGTTCGGTGCTGTCTGCGTGACAGTGCC 74324 36 100.0 30 .................................... TCCGCTTCCAATATTGGCGGTGACTATAAT 74390 36 100.0 30 .................................... TGATAGTGACAGAAACCAATTCCACACCAT 74456 36 100.0 30 .................................... TTGTAACAAGTTTGGTATTTGATATACGTT 74522 36 100.0 30 .................................... TATCTATCTGCTAGCTTATTGAGGACTTCC 74588 36 100.0 30 .................................... TATGTCTCCGTCTCCTGAGCCTGTTCCTGT 74654 36 100.0 30 .................................... GAACCAACGGCTGAAAACTTGGTCGGTTCA 74720 36 100.0 30 .................................... CAAGAGCATCCTCATCTACCGCAATCATTC 74786 36 100.0 30 .................................... TACTATCGCAGACGCTACAAACTATGCTAT 74852 36 100.0 30 .................................... GTATTTTTAAATTGTATTGTAGAATTTAAT 74918 36 100.0 30 .................................... GGATGTTTGGACAGATACTTGGGTCGAGTG 74984 36 100.0 30 .................................... CATCTCTCCTTGTCTCAATACGATGCAAGG 75050 36 100.0 30 .................................... TACTGTTGAAACCTGCAGGTCTTGCTATCA 75116 36 100.0 30 .................................... TATGCGGTTGATAGTGCAAACATTAACCAA 75182 36 100.0 30 .................................... GTATATCACTGGTTTTGTATCTGCTGGTAA 75248 36 100.0 30 .................................... TGCATTTATCGAACTCGGATTGACGAAAGC 75314 36 100.0 30 .................................... TGTTACATTAATCCTATTTGATTTTGTAAC 75380 36 100.0 30 .................................... AGTGTGCAAGTCACACACGTAGAAACGCAT 75446 36 100.0 30 .................................... CCAGAGTGGCGTCCCCTCCAAATGTTGATT 75512 36 100.0 30 .................................... TAAACTTTCACTTGAACTATCAGCAATATA 75578 36 100.0 30 .................................... TAGGTCTGAAATTGATTACACTATTGTCGC 75644 36 100.0 30 .................................... AGGATATTCTCAAATGTTAGTATTAGCTAG 75710 36 100.0 30 .................................... CGCAAAAATGGAAAAGGAAATCCGTCCTCA 75776 36 100.0 30 .................................... CTCGCGAACAATCATCGGGAGCAATCGGAA 75842 36 100.0 30 .................................... GTAGAAAGTATTATCTTAAAAACGAGGTAG 75908 36 100.0 30 .................................... ATTATTTGTCATTAATGCAAAAATCTGATG 75974 36 100.0 31 .................................... CTCAAATGATTGCTTATATTCAATCTCTATT 76041 36 100.0 30 .................................... ATGAAGCTCCTGAAGTTGAAGAAGAGGCAG 76107 36 100.0 30 .................................... CATGAGAGTCGAAGAGATTGCCCAGCGTTA 76173 36 100.0 30 .................................... TTTTCAAACAATGACAAAGAAGTCATGTAG 76239 36 100.0 30 .................................... TAAAAAATCAAGTGGTAAATGCTGTCTGAT 76305 36 100.0 30 .................................... AGCTTATAGAGACAGTGACGGGTCTATATC 76371 36 100.0 30 .................................... TCAGTTCAGACCTTCAGAAAGGTAGACGCA 76437 36 100.0 30 .................................... AAAACAAGCAGTAGATGATGGATATATTAA 76503 36 100.0 31 .................................... ACGGACACGTCGTGATTGTCGAGGCCGTCAA 76570 36 100.0 29 .................................... GTAGATGATTTTGAAGCGTTTACGGGTGC 76635 36 100.0 30 .................................... TCTAAATTCAAGTGGTATGGTTAAAGAGAG 76701 36 100.0 30 .................................... CGTTTCTTCTCTTATGTTATTATCATTTCT 76767 36 100.0 30 .................................... ATTATCAGTCAAACAATGAAATTCATTTTG 76833 36 100.0 30 .................................... AACCGCAGACATTGAGAAGGTTGTGGTTGA 76899 36 100.0 30 .................................... ATTATTTTGAAATAATTTTCGGATATACCT 76965 36 100.0 30 .................................... AGGTTGGAATAGAAACAGAATGGTTGGTTG 77031 36 100.0 30 .................................... AGATAATGGGAAGATAGAGGAATTGTATAG 77097 36 100.0 30 .................................... GGTTAAGGAATCGCCCCTCTATAATCATTT 77163 36 100.0 30 .................................... CTTTAACAAGTTAGGAATTTTATAGACATT 77229 36 100.0 30 .................................... TATCAATGAACTCGTCAAAGGCAATATCAC 77295 36 100.0 30 .................................... TCTTTTCTCTTCTGTTGAAATATCCCCGTC 77361 36 100.0 30 .................................... AAGCAAGCTGGCAACGCTTGAACAATCTAG 77427 36 100.0 30 .................................... TGAGCAAAATCTAGTTGGCAATCTATCAGT 77493 36 100.0 30 .................................... GATATACTTCCATTGATTCTGCCCATCAAA 77559 36 100.0 30 .................................... CGGCCCAGAAAGATGGTTTTATGGTTTCGA 77625 36 100.0 30 .................................... TTACAAAGACTTCTTGAAAGCCTGGGAACG 77691 36 100.0 30 .................................... AGTAATGGATCCATTCTTAAGAACCCATAT 77757 36 100.0 30 .................................... TATGAATTCGGCGCCATTTCTCATAACACT 77823 36 100.0 30 .................................... CGTTATAAATTGTTAGTGATGGAGCATTAT 77889 36 100.0 30 .................................... TTTGGATACTCAGGAAAAGTTCATCCCAGT 77955 36 100.0 30 .................................... ATCTGCTGATTTTTGTCTTTCTCGTATTCT 78021 36 100.0 30 .................................... ATACATTAAGACACAGATACCTAATCGATA 78087 36 100.0 30 .................................... ATTGTTGTTGTCCTATCAGCGGGTTCAGTT 78153 36 100.0 30 .................................... ACGCTATTTTTTTGAAATTAGCTGATTGCC 78219 36 100.0 30 .................................... TTTGATTGCATCATTGCTAGCTTTCGTTGT 78285 36 100.0 30 .................................... TAAATTAAGTATGGTTGAAAGTCAAGCTTA 78351 36 100.0 30 .................................... TATTGTGTTGAAGCGATATTTCCGAATGGA 78417 36 100.0 30 .................................... TACCAGACTTTCTATAAGAACTAAACAACT 78483 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 71 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATCGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCATATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGATAAAAAATAGTCTACGAG # Right flank : CGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACTTCTAGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTACCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGGTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCTACCCCCTTTTCCATGCTATACTATATGTATTCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //