Array 1 177898-181027 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024961.1 Legionella pneumophila strain 80-045 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 177898 37 100.0 35 ..................................... TTTTCTGTTAATGGCACATCATAACCTTTTTCTAC 177970 37 100.0 36 ..................................... GGCCACAAATTATTTCAGTTTTACCTGACCATTGAT 178043 37 100.0 35 ..................................... AACTGTAAGAGTTAAAATTCTGATTATACAATTTT 178115 37 100.0 35 ..................................... TGAAAACCCGTTTTGGTTGGCGTGAAACAGATAGC 178187 37 100.0 34 ..................................... TTCCATTACCCCATCCCAATACCAACGAAACGCA 178258 37 100.0 35 ..................................... CGCATCAACGGCGCGTGAGTTCGCGCAAGGTCTAA 178330 37 100.0 35 ..................................... ACGATTGATTTTTCGCTACCCACAGGGTTATCCCC 178402 37 100.0 33 ..................................... CGTATCGTTGCTTCTTTCCATTCGGGGTGTTTT 178472 37 100.0 35 ..................................... CTGATAATTTTGACGTACCTGCTGAATGGACAGAA 178544 37 100.0 35 ..................................... GTACTGCCGAAACCTTGAGCGCCTCTCTCAGTAAG 178616 37 100.0 38 ..................................... TCAGAATGATGCTACTACATATCCTATCGCATACGAAA 178691 37 100.0 34 ..................................... CTTTGTGCTACTTGTCTAACTAATAGCCCCGCGC 178762 37 100.0 36 ..................................... TAATAGGATTATATGTAGGTAATTTACGATAATGAA 178835 37 100.0 35 ..................................... CGCAAGTTTGCGCTGTATATTCGTAAAATATGGCT 178907 37 100.0 36 ..................................... TTCGCGGGCGCGCCAACGTTACCTGATACGCCGCAA 178980 37 100.0 34 ..................................... GCCAGTTCTAGCGCGTTCTATTATACGCGCAGCC 179051 37 100.0 35 ..................................... CCTTGAAGGGGTGGCGACTTAACCAATAGTCGAAT 179123 37 100.0 35 ..................................... TAGTAATTCCCCTTACTTCTTAGCAAGGAAAGCGG 179195 37 100.0 35 ..................................... TTAGTAATAGCCGGAGGTGAATTAGAAGTCGATAC 179267 37 100.0 35 ..................................... TAAATATGGTTATTAATAAAAGTTTTTAATTCAAA 179339 37 100.0 35 ..................................... CAAATTGATGTAACTCATACCGTTGAATTGAATGC 179411 37 100.0 35 ..................................... ATAATATCGAACACGATTCTGAGCAGATACAAGCG 179483 37 100.0 34 ..................................... CAAATTGGCAGGGACATCGGGTCTCGAACCCAAA 179554 37 100.0 35 ..................................... CTTGTTTGCGCCCCCCCAGCATTTTGACCAATACC 179626 37 100.0 34 ..................................... TGATAAGCGCACAGGGATGTACGTTCACCATCGT 179697 37 100.0 33 ..................................... CTTGTAGCCCGCAGCTTTCAAAGCGTCCTTGTG 179767 37 100.0 35 ..................................... TTGGTGGAATCGCCCATAACAATTAACAACGTATA 179839 37 100.0 36 ..................................... GCTTCCTGCATCTCATCTAATGACACAGCTTTTTGC 179912 37 100.0 34 ..................................... ATTCATAGATGGATACATCATGAACCCTGCTAAA 179983 37 100.0 33 ..................................... GCTTGTGCCATGCGCTTAACTATTGCCCTTTCC 180053 37 100.0 39 ..................................... ATTATGAAGACCTTAATGATGTTGTGGATTTATCGTTTA 180129 37 100.0 35 ..................................... CACTATGGTGCACGCATTCCATTTGCTTAATCATT 180201 37 100.0 34 ..................................... AGCTTGCTGTTCCAAAATGGAATCAAGTAGCATG 180272 37 100.0 34 ..................................... TGCAATCCAAAATGTTACTAATGTTGATTTACCA 180343 37 100.0 36 ..................................... TTAACAGGTACTATAGAATTTGCAATGGAAGTTGTG 180416 37 100.0 34 ..................................... CTTTATTGGCATTCTTTTGCGCTTGTCCTTGGAA 180487 37 100.0 35 ..................................... ATTGGCATTGACGACCTAATCACCAAGCTCAAAGA 180559 37 100.0 34 ..................................... AGGATAAAGCCATCACACTCAAATTGACCATCAA 180630 37 100.0 35 ..................................... TTCCAAAACATTCAAGGTAATGCTCTTAAGTATAA 180702 37 100.0 35 ..................................... TGTAATCTTCAACGTTAAAGATGAATTGTTGTGCT 180774 37 100.0 36 ..................................... AAATCATTGTGATTGGTAATAAAGAAAGCGGTTTAC 180847 37 100.0 36 ..................................... ACCATTGCGAGTGTAGAAAGTGTTTACGGATGCAGC 180920 37 100.0 34 ..................................... TCATTGCAAAACCAAAGGTGTCTCGTGTCATGTA 180991 37 86.5 0 .......................TT...T.A.....T | ========== ====== ====== ====== ===================================== ======================================= ================== 44 37 99.7 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCTTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCTTATGGAATGCTTTCCGAACTGATTTTTGAAAAACCATGTACCAGAGGCTATATTATTACTGGTGAAAAGGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGTTCAAAGTGATTGAAATTTGTGCTAAAATAAAGAAAATTTTTGGCACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTGAAATCGTTATATGCTCGCTATTAAGACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTTAATTATTGCCTTCTTTTTCGAAAAATCAAGCCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCT # Right flank : TACTCCATACTTTATTCTCTGTATACTATTATAGTAAAAATCCATGGGGTATTATTTTATATAATTAAACAGAATTTAATTTTGTTGTATTTTAATTTCTTCGACAAACATCAGAAAATATAATCGGTCATTTTTACCAATTATTTGTAAATGTTAGATGCAGTTTTAGGGGCACAATAGGTCATATTTGGTTATATTTGCTTTTTTTCATCTTATTTATTTTATAATTAACTTGATAATTATAAAGTGCTATTTTACTCTGTTGCTTTTTCTGACAATACCTGTCTTTACAGATTATCTTTGTAACAAATTTTCTTAATTTAACCTCAGCTCGATATAAGAATAAGGTTATGTGATTGATGATTCAAAAGCCAAACCGCAAGTCAAATTAGTACGCGGTCAACTTCAAATTATTGCATCAAGGAATATAGAACATAGACGGCAGCTGTTGTCAGATTGGTATAAGCAGAAAGCTTTTGAAGTTTTTAGCAAAAGGTTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 214667-212677 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024961.1 Legionella pneumophila strain 80-045 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 214666 37 100.0 34 ..................................... GTTACCAACATTATCCCTCGTGACAGATATTGAT 214595 37 100.0 35 ..................................... CCTAAAACAGATTTAACTAATACAGGAGAAAATCC 214523 37 100.0 36 ..................................... GGGGATACCAACGATCTAGAATTTTTTGTACTTTAA 214450 37 100.0 36 ..................................... CACCATAGATGTTACGTTAGATCAAAGTCATTTAGG 214377 37 100.0 36 ..................................... GCGCGAGTGCACATTTAGTTAGTGACGCTAGTAATT 214304 37 100.0 35 ..................................... AAAAGCTTGGGTCTGGCAACTTGGCGAGCAGTATG 214232 37 100.0 35 ..................................... TAGTAATACATCCGGCCCATTATGTCACAAATAAT 214160 37 100.0 36 ..................................... GTTTGTCACTCGCGGCACTCCTTCATTGTCGTAGTT 214087 37 100.0 35 ..................................... TTACATCTAAGGCAGTCTACCCCAGTACACGGTGA 214015 37 100.0 36 ..................................... CACTAGTTATGATTGACTTAATAGATAGTTGTATAA 213942 37 100.0 35 ..................................... TGTCTGTAAATTGGGTAAAAAAGTCTTGTATTGTT 213870 37 100.0 37 ..................................... TCTAAATTCGACAAAAATAACAAAAAACAAATTTGGA 213796 37 100.0 35 ..................................... AAAATTGTGTTCCGCTGCTCGACAAAATTATTTAA 213724 37 100.0 34 ..................................... GGTAAGTAAAAGGTGAATTAATACCATAAATGCA 213653 37 100.0 34 ..................................... TGGGACTGTCCATCCATAATCAATTGGGCCAATT 213582 37 100.0 37 ..................................... TTCTACCGATATTTCCCACTATACCTATATCATAAAG 213508 37 100.0 35 ..................................... TCTATCAGGCTTGCAGAAGTGTTGGCCAGGAATTG 213436 37 100.0 34 ..................................... ATAATAACTGAGGTGGAAAAACATAGAGGTTATG 213365 37 100.0 35 ..................................... TTAGAAAAAATCAATTATTTTATTGATAAATTTTT 213293 37 100.0 37 ..................................... GACTTAGTAGAAGAGGAAACTAGAGGAAAAACTAAAT 213219 37 100.0 33 ..................................... CACTTAGAACATAGCTTTGATTCTGTTGGTGTG 213149 37 100.0 34 ..................................... AGACATGCTAATCCTTTTAGGCCATATCAATGCC 213078 37 100.0 36 ..................................... ACAAAACTAGTCAAATGCCCCGCACCAGACATGGCA 213005 37 100.0 36 ..................................... TTTTTATATAATAATCCTATTCTGCTAGGTTTAATT 212932 37 100.0 37 ..................................... ATCCTGTAATATTGTCGAATACGTAATTAATCTCAGG 212858 37 100.0 36 ..................................... ACTTAGCCTCAATTCCCAAACCTCTGTGGCCGATAC 212785 37 100.0 35 ..................................... ACTTTATTAGATATGACTAATATATTAATAGCCAA 212713 37 81.1 0 ....A......C...........TT...T.A.....T | ========== ====== ====== ====== ===================================== ===================================== ================== 28 37 99.3 35 CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Left flank : TCCTTTGCATCAAAAATTAGTTTAGGTCAAAAGATGCAACTGACCGCATATGGAATGCTTTCTGAATTGATTTTTGAAAAATCATGTACCCGAGGCTATATTATTACTGGTGAAAAAGCCAAAGCCAAATTAATAAAAATTGACGAAAAATCAAAGTTCAAAGTGCTTGAAATTTATGCTAAAATAAAGAAGATTTTTGACACAGAAACATTACCATACAGCACTGCTAATGGACTTCAATGCATTCAGTGTGAGTTTCTAAATCACTGTAACGATAGATTTTAAAATCGTTATATGCTCGCTATTAATACGAGCATAGAAAAACGATTCAATCTTTAATTTTGTTGATTTCAGGGTATCGAAATTTAGATGATTTCTAATTCAAGTATTGCCTTTTTTTTCGAAAAATCAAGTCTAAATAATGCAATTTGCTATTTTTCGAAGAAAACCACTTTTAATTCCTCGTGTTTCTTTAAAATAAACAAAGAGTTAAAATTGCT # Right flank : ACTCCATACTTTATTCTCTGTATACTATTATAGTAAAACTCCATGGAGTTATTATTTATATAATCAAACTGTCGTAACTCCATGAATGTGACACTTTCATGGAGTTACGACAGCTGTTATGTTTGCTTGTTTTTCATCTTATTTGCTTAATACCTCAAAACTTATGGTCGTTGGATACCGGATAGCTCTTCTCAATCAGATTATCATCCGATGCATGATTGGAGTCTTTATTTAACAACCCCGCCCAAAATAAACCAAATTATATTAAAATTGAACTTTTAATGTGGTATAATCGCGAGTCTAAATTTATGCACACCTATAGTGGAATTTCAAATGAAATATATTTTATTGCTGCTATTTAACATCAGCTATGCTCCAAATCATCCTGTAGTGACAACTAGTCTTGAATTTAGTACCCAGCAAGCCTGCAAAGACGCAGGTAAACAAGTTCAAGAACTCACAAGAACCCGTAATGGCTCTGCAGTGCCCGATTTTATTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAATAATCCCTCATCTAAAAATCCAACCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //