Array 1 115806-114714 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VYRF01000017.1 Streptococcus agalactiae strain GCH53 17, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    115805	    36	 100.0	    30	....................................	AACATTAGCCTTTTCTAACTCTTCAGCTGT	
    115739	    36	 100.0	    30	....................................	CCGTCAAACAAGAGCGACAGCGAAACAAGC	
    115673	    36	 100.0	    30	....................................	TTTTATTGGTTTTCTAAGTGCTCGACCATC	
    115607	    36	 100.0	    30	....................................	AGTTACTTCTGCTTGGGTTTGATAAGGGTC	
    115541	    36	 100.0	    30	....................................	GAAATGTGGAGTCATTCAGGTTGATGATGG	
    115475	    36	 100.0	    30	....................................	AAAAAATAAATGACTTTAAAGCACTTGGAG	
    115409	    36	 100.0	    30	....................................	AAATGTTAATTTCATATCTACATCTTGTTC	
    115343	    36	 100.0	    30	....................................	ACATAACGTTCAAAAGTTTCCACTAATAGC	
    115277	    36	 100.0	    30	....................................	TCAAACAACATTGGTGATCTTATTGCGGTA	
    115211	    36	 100.0	    30	....................................	GATTACCTTAGATGATGTTCTAATCGGTAA	
    115145	    36	 100.0	    30	....................................	TTAACAGTTTCAAGTCTGTCTTGTTACTTA	
    115079	    36	 100.0	    30	....................................	ACTCTAAATGATAGTTATGAGTTAAATGTT	
    115013	    36	 100.0	    30	....................................	CAAATTACAGTTTCGACTGATTATGGAAAT	
    114947	    36	 100.0	    30	....................................	ATATGTTCCACTCTATGAATTTAGGCTCAT	
    114881	    36	 100.0	    30	....................................	TTTTTACCAATGCTTCCATATCGCTTATAT	
    114815	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA	
    114749	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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