Array 1 47621-47123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTY01000008.1 Campylobacter coli strain SH-CCD12C120 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 47620 36 91.7 30 .GG...............T................. AGCTACCCCTTCCACCTCTTATAATAATTT 47554 36 100.0 30 .................................... TCATCCCACCACTTCTATAAAATTTTTAAA 47488 36 100.0 30 .................................... TTTAGGGTTTTTCGCAGCCTTACTTATTGC 47422 36 100.0 30 .................................... GAACCTTTAGAGTATAACAATAATCAAGTG 47356 36 100.0 30 .................................... CGAAAGAAAACGAATTACAAGCGAAAATAG 47290 36 100.0 30 .................................... AAATCGTAGAGCCAAAACAATAGCACGAGA 47224 36 100.0 30 .................................... ACTTTGTGGGAATTTAACACGCGAAGGATT 47158 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.0 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : GCCGACATAAAACCAGGTAGACATATCAAAATAGCTAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACACAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAAGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGCAATATAGAGTTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGCAAAAAAGAAGGCTCTAGTGCGATCATAAATAATCTTAACAATAAAGCTGCTCTTATGGTGGTGCCAAAAGAATGTGAAATGTTAGAAAATGAAAGTTTAGTAGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTCGCAACCTCCTTTTAGTGGAGTAATTAGCCCTAGCGGAGTTTCAATCCACTA # Right flank : AGATATTTACCAGATAATGAAAATTTCGGGGTTTTTTGATGAAAAATAGCAAAAATTATGCTATAATCTCAATAAGAAATTTAAAAAGGGACTAAAATAAAGAGTTTGCGGGACTCTGCGGGGTTACAATCCCCTAAAACCGCTTTTAAAATTCAAATAAATTTTGCTGATGATATTTTTCTTGTTTTTTGTTTAGTTGTATTTCTTCATTATTTGAATTTTTGTATTTAAATTCTCCATGACTATCTATATCAAAAAGCGTTAAATTAGTTTCGTTATTAACTTTTTCATTAAAAACTATGCCACCAAGCAAAAGCTCCATTTTATCAAACTGCTTTTCAGTGATGATTAAAGCCCTTACATTTCCATAAGGTGGCAAAATCTTTTTTACATTTTCAATAGAACTTTTTGCAGAACTTAAACCCTTGCAAATACGCATATAAACGCTAAATTGTAGCATAAAATAACCCAATTTTATAAGATTGTTTCTAAATTTACTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 1891-2058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXTY01000017.1 Campylobacter coli strain SH-CCD12C120 Scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1891 36 100.0 30 .................................... AAACATTCATTCTTTCTTTCTCCAAGCCAT 1957 36 100.0 30 .................................... TTTTCCTTAACCATTTCTTCAAGTTTTGAA 2023 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTAGCCTATTGTTAATTGTTTACATGGTAAAAT # Left flank : ATAACCGAGGAAGTGAAAGCCGGAGGGCGTTACTTTTCTATTATGGCGTTGTGCTCTTATGGCTTGAAGTGTGGCATATCCGAGCAGAAGATACGGAGAGACGCCTATGCGTTCCTGGACCATTTAGAGAGCCTTACCGAGGACGAGGACAACCATTTCAGCCGGGCAGATGTGAAAGACGCTCTCCGGGCATTGAAAGGGGACAGAAAAAGGCTGTCAACGATAGCAAGCCGGGAATGGATAGAGGACAACACAAAGGTTACGATACCAGCAAATAAGCGGAATTACAGAAAGCAAAAAGACCATGTAAAGGTTATGAATACTATGAAAGCTTTAAAAAAGCAGTTAGGAGAAGAAGTAAAAGAGGGTAGACCAAAAGGGAGTGGAACAGCGGAGCAGACAGTCAGAGAATGGCAGGAGAGCCACCCAGCAGGAAAGAAAGCGGACTGCATTCGAGAGACAGGATTGAGCAAGCCCACCGTTTACAAGTGGTGGAAGTA # Right flank : TAGACTTATCTCAAAAGCCTATTTTATCAATGTTTTTTCTTATTTTTTGAGCAAAAATATCTAAAACCATTTGCGCTTTTCGTTTTCAATTAAACTTAATTCACCTGAAGGACTTATACTGTATTTTTTAATTTCAAGTATTTTTCCTACCACTATAGATTCTTTATCATTTTTTCTAAAAACAACCATTTCATCTTCACTAAGGTTGTGATAATTGTTGTCGTGTTTTTTATAAGTTATTTTACTTCCTGAAGTATTAAAACCATGATAATAACAAATAATAGGCTCTTTCATACCCTTTATTTTTACGCTAATTGGAGTATTTTTATACAATGACATACAAAAGTTATAATTTTCATTCATTTCAATGCCTTCTTTGGTTTCTCCATTTGATGTAGCTGCAGGGGTTTTATTTGGAAGTTTTTTTGTAGAAAAATCTGCTTTATAAATAGGCACTGCATGGAATTTGTTTTTTTTATCTATAAATAAATCAGATCTCA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCTATTGTTAATTGTTTACATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //