Array 1 136835-135829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMWR010000011.1 Pseudomonas aeruginosa strain 185345 185345_ctg_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 136834 29 100.0 32 ............................. GGGCTGTCGGTGCTGGCGCGGAAGATCGAGGA 136773 29 100.0 32 ............................. CCAGCAGCAGCGGACGCATCCCAAGCGACTCA 136712 29 100.0 32 ............................. ACGACTATGACACGGGCGCCCCGTGGGAAAGG 136651 29 100.0 32 ............................. ACCTCGCTAGAGGCGATCCTGGCTCGCTTGAA 136590 29 100.0 32 ............................. CGAAGCCCCCTTAGCCCGATAGCAGCGTCACC 136529 29 100.0 32 ............................. CACTCCCCGAACACCATGTGATCAAGCCCAGC 136468 29 100.0 32 ............................. GAATCGACCGCGTCCGGCGGAATCTTCGTGTG 136407 29 100.0 32 ............................. CCGTGCTTGCGCCAGAGGCTGGCGTGGTCGAG 136346 29 100.0 32 ............................. TAGGCGGTTTGCAAGCGCCGGTAATCGACCAT 136285 29 100.0 32 ............................. GCATAGGCAAAACCCCGTAACCCGCGCCTTCC 136224 29 100.0 32 ............................. ACGATCAAGGTCTTCAACCGCGAGGGCCAACC 136163 29 100.0 32 ............................. GCGCTGCCGGCTGGTGAGTACAGGCCCGTCGA 136102 29 100.0 33 ............................. CAATCATCGAGTCCAGATTCACATTGGCGCCCA 136040 29 100.0 32 ............................. TGGTGGGAGGTGCCGCCGGAGTCGGTCTACGC 135979 29 100.0 32 ............................. GCCGAACAGGTGGAACGCATCCTGCAGGCGCA 135918 29 100.0 32 ............................. GGCGATGCCGATCTCCTGAAGCGAATGTACGT 135857 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGGTGCGATATATGCACCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGACCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 146903-146385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGMWR010000011.1 Pseudomonas aeruginosa strain 185345 185345_ctg_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146902 29 100.0 33 ............................. TTCAAGGGCTGTCGCACTGTCTGGTGGGATGGC 146840 29 100.0 32 ............................. ACCGTAACCCTCATTGAATACCTGGCTGAGCA 146779 29 100.0 32 ............................. ACCTTCATGCTGACGTGGAACGACCTGTTGGA 146718 29 100.0 32 ............................. GTTCCCTGATGGTTCCCTTGTAGGTTCTATTA 146657 29 100.0 32 ............................. GGATCTTCCATGCCATCGCGCTGTGGCTCGCC 146596 29 100.0 32 ............................. CCTTCGGGCAGATCATCGGCCAAATCCCAGCC 146535 29 100.0 32 ............................. TAGCGCAGCCCGTCGAGGAGCTTGCGTTGCAG 146474 29 89.7 32 ............A............G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 146413 28 79.3 0 A..........A..C.....-..A....T | C [146404] ========== ====== ====== ====== ============================= ================================= ================== 9 29 96.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : CGCTCGGCGCGGCTGGACATGCAGAAAGCCCTGGACCTGGCGGTGAAGAGCCGCGAGCGGGTGCGCTGAGGCGTTCCGCCGGCCCACGGCCTCACGGCGAGGCTTCCCGCGCAGTTCGCCGGACAGGGTGGCGCCGAACGCCAGTTAGCGATGCCGACCGGCAGCGGCGTGGCCATTGTCGTCTTCAGGCTCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCTCCGTTGGCCAGGAAGCGCGGCGAGTGCATGGACGTTCGGGGCCGGTTCGATGGTGAAAGGCGGGGCCATGTCTGCGGAATCTTGCTCGGTTCCGGGTGAGATGGGGGCAGGGAATATAGGAGGGCGGCGGGTTTCGACTGGTTCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCAGCTTGGCCCGGTGGAATTTCGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGA # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAACAACTGACGGTGCAGGCGTTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTTGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAACAGATTGTTAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGTCACGGGCGGGATTGGTCCCGGTCCATATCCCTCCTGCGGTCCTTCGCTTGCTAAACGGGGGTGAGCAGGCATATCCCTCGCTGGCTGCTCCTTGACCAGCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //