Array 1 65353-62196 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHF01000001.1 Moraxella catarrhalis strain COPD_M64 NODE_1_length_349776_cov_40.5691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 65352 28 100.0 32 ............................ TATCAGTGTTGATACTTCACATTTAGCTACTA 65292 28 100.0 32 ............................ CCTGACAATGTCGGATTTATCAATGTGGTGGG 65232 28 100.0 32 ............................ TGTAAATCAAGCTCAATTTCATGATTGCCTAA 65172 28 100.0 32 ............................ AGTCAGCACCGCTTTGATGATTGATAAGATAG 65112 28 100.0 32 ............................ TAGATCTGAGCCATTAAATTTCATAATGAGCT 65052 28 100.0 32 ............................ TTACTGTATTCACTCTTGGGTGCATTAGTTAT 64992 28 100.0 32 ............................ GTTCAACACCAACCGAGAAGCCTACAATGAAC 64932 28 100.0 32 ............................ AGCTTGATTAAGTCCCATTTGTCATCGAGCAT 64872 28 100.0 32 ............................ ATCTAATGCAGACTGCGGCAAATTTGGCGTGC 64812 28 100.0 33 ............................ CTAGAATAAATGCACCTATTGCCATTCTCTTTA 64751 28 100.0 33 ............................ CTGTGCAAGTGCTGTGGTAAAATTTGCGTCGAC 64690 28 100.0 32 ............................ AAAAGGATCGGGCTATGATCTCTTAGGTGCTT 64630 28 100.0 32 ............................ TAAGCTATGCAGGCGGTCAAGCATATGACAGC 64570 28 100.0 32 ............................ TTCAGTAGTGATTTTACTGTCAATAGCTGCAA 64510 28 100.0 32 ............................ TGGTGATGTGCTATATGCTAAGTATGTTTGAT 64450 28 100.0 32 ............................ ATTTGCCATCAGAACCTTTGACGGCGTTCATA 64390 28 100.0 32 ............................ CAGCGGCTCTATGGAGCGATGTACACTAATAA 64330 28 100.0 35 ............................ CCAGTCGCTCAGTAGCGAGTTAAGTTTCAGTTTCA 64267 28 100.0 32 ............................ TCTTATCATTTTTATGATGCAGTGACACGCTT 64207 28 100.0 33 ............................ TAATCCCAAGACCTGAGCAAGTCTTAAAACTGC 64146 28 100.0 32 ............................ AATCTGTCCAGTCTGATGTATTGCCCAGTTTA 64086 28 100.0 32 ............................ TTGGTTTTCATGATACGCGTCACGAAGCAATT 64026 28 100.0 33 ............................ TACTATACCTGATTCTTATTCTGTGAATTATGT 63965 28 100.0 32 ............................ AACTTTTTCGTAATGCAAATTAAGCAGTTCTG 63905 28 100.0 32 ............................ ATACGCATCAAGCAAGTGACATCGCTGATCTG 63845 28 100.0 32 ............................ AATTATATTACAGTTGTGAACAGTCGAGAAAT 63785 28 100.0 32 ............................ TTGGTGCAACATTAGAGATGACCACTTTTGTC 63725 28 100.0 32 ............................ TAGAGGGTTCGTAGTCTTCCACTGAAATAGTC 63665 28 100.0 32 ............................ TGCTTGTTCACGCCCTGCCTGTGGACTAAAGT 63605 28 100.0 32 ............................ ATAAGGCTACCGCTCCACACCCATTCGGTCAT 63545 28 100.0 32 ............................ TGATAAATCTACACCACGATTTTGTAATTCAT 63485 28 100.0 32 ............................ AAACAAGTCGATAAGATTATTGAACCACTATT 63425 28 100.0 32 ............................ GACGATTACACGGCTTGAAGTATTTAGCCGAT 63365 28 100.0 32 ............................ AATCAAATATCTGCTGATGAGATAAAACAAAC 63305 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 63245 28 100.0 32 ............................ CTGCAAATCCTCTGGAGCTGCTGTCCAGTCTG 63185 28 100.0 32 ............................ AAAATAAATGGCTTCTGTAGCGTTAAATCGCT 63125 28 100.0 33 ............................ ACTTACTGAGCTTTCAACAGTATTAATCCGTCT 63064 28 100.0 32 ............................ AGAATACTATGACCAGATGAAGCTCATTATGA 63004 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 62943 28 100.0 32 ............................ ATCGGTCGGTCATGGCGGTAAGCTAATTTTGG 62883 28 100.0 32 ............................ TGTTGATACCTTACGCCTAGAATTCCCCAACG 62823 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 62762 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 62702 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 62642 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 62582 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 62523 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 62463 28 100.0 32 ............................ GAAAACATGGGCTTTTTATCGCCGTGCGGACT 62403 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 62343 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 62283 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 62223 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ =================================== ================== 53 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //