Array 1 359014-360200 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVPH01000003.1 Salmonella enterica strain 170_17 NODE_3_length_584594_cov_31.7574_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 359014 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 359075 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 359136 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 359197 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 359258 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 359319 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 359380 28 96.6 32 .................-........... AGAATGTTCAGAACGATTATATTTTGATTTGT 359440 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 359501 29 100.0 33 ............................. GGGCTCATAAGTATTTCACTGACTGACATGCGG 359563 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 359624 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 359685 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 359746 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 359807 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 359868 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 359929 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 359990 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 360051 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 360112 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 360173 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 376747-380194 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVPH01000003.1 Salmonella enterica strain 170_17 NODE_3_length_584594_cov_31.7574_ID_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 376747 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 376808 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 376869 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 376930 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 376991 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 377052 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 377113 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 377174 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 377235 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 377296 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 377357 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 377418 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 377479 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 377540 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 377601 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 377662 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 377723 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 377784 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 377845 29 96.6 32 ...C......................... CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 377906 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 377967 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 378028 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 378089 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 378150 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 378211 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 378272 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 378333 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 378394 29 100.0 31 ............................. TACAGTAAACGCTAAACTTTTTTATTGTCGC 378454 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 378515 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 378576 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 378637 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 378698 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 378759 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 378820 29 100.0 33 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAGG 378882 29 89.7 32 TGC.......................... CAGCGACACCACCCGCCCGGGGACATTGCGCA 378943 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAGT 379004 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 379065 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 379126 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 379187 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 379248 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 379309 29 100.0 31 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGT 379369 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 379430 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 379491 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 379552 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 379613 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 379674 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 379735 29 100.0 33 ............................. CCTTCAGGCGAGCATCCGTCAAAATTCTAATGG 379797 29 93.1 33 ....................AG....... AATCGACGCGCGCTGGCAGGGGAAATGATGGTC 379859 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 379920 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 379981 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 380042 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 380103 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 380165 29 96.6 0 ............T................ | A [380192] ========== ====== ====== ====== ============================= ================================= ================== 57 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //