Array 1 5335-6949 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTL01000028.1 Salmonella enterica strain CVM 43846 43846_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5335 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 5396 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 5457 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5518 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5579 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5640 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5701 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5762 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5823 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5884 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5945 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6006 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6067 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6128 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6189 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6250 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6311 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 6372 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6434 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6495 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6556 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6617 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6678 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6739 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6800 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6861 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6922 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23082-24558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTL01000028.1 Salmonella enterica strain CVM 43846 43846_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 23082 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23143 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23205 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23266 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23327 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23388 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23449 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23510 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23571 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23632 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 23693 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 23754 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 23815 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 23877 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 23980 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24041 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24102 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24163 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24224 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24285 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24346 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24407 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24468 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24529 29 96.6 0 A............................ | A [24555] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //