Array 1 94443-95729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLX010000005.1 Listeria welshimeri strain FSL W9-0234 NODE_5_length_101155_cov_86.123172, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 94443 36 100.0 30 .................................... TGGTGGTAAGGGAATATTTCAAGTTTCAAA 94509 36 100.0 30 .................................... AAAGTGACTAGTGTATCAGTATCTACTTCT 94575 36 100.0 30 .................................... TATTTTTTTGGTTTTACAACCTGTTTTTTT 94641 36 100.0 30 .................................... TAATGTACCTGGTATTAAGGCTTTGGCTTC 94707 36 100.0 30 .................................... TTAGATACTGGGACAGAAGCAAACCAACTT 94773 36 100.0 30 .................................... ATTTGAAAATTTCACATATCTGGCAACAAG 94839 36 100.0 30 .................................... TAACATTTTATTGCAAGATTGGTTATCAAT 94905 36 100.0 30 .................................... CTGGAAACAGGATGTCCGGACGCGTTCTTG 94971 36 97.2 30 A................................... AGGATGCCAAGTTCGAAGTATTTATGCGTC 95037 36 100.0 30 .................................... ATACTCAAGAACCTGAAAATTATAAGTTAA 95103 36 100.0 30 .................................... AAGGTTCATTTCCGTATAACATTCCTCTTC 95169 36 100.0 30 .................................... CAATTTCCACAAACCCGACACATTTATGTC 95235 36 100.0 30 .................................... TTACAGAAATAGCTTCAAAAGAAGATGAAG 95301 36 100.0 30 .................................... TTAAGAGGTATTTTTCATGGAAGCAATTCA 95367 36 100.0 30 .................................... AGTGGAGGCTCTTAAAACACTTGAACTGTT 95433 36 100.0 30 .................................... TTCGCTCACCACCTCAATATCTTTAATTTC 95499 36 100.0 30 .................................... TTTTAGGGGCACTATTTTAGAACCTTGTTG 95565 36 100.0 30 .................................... CAAGTGATTCATTAGAAGACGCTAGACGCA 95631 36 97.2 27 ..........................T......... GAATATTCTCCCCCATCGCTAACAGGG 95694 36 72.2 0 ............CA.....C.....ATC.A..C.CA | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAATGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAATACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAAGATAAAATTCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACCCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAGCTATTAATAATTAGAAATGAAAACCGATATAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //