Array 1 4742-4119 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV824508.1 Kytococcus sp. HMSC28H12 Scaffold427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4741 28 100.0 33 ............................ GTTCTGCACCTCGGCGGCAGACAGGAACACCAT 4680 28 100.0 33 ............................ CCTTGATCTGAGCAAGGAGGGGCTAATGCCCAA 4619 28 100.0 33 ............................ CACGAACTCCCCCGGCGCCCGGCCCGCAACCAG 4558 28 100.0 33 ............................ GGCTTCGACGCCCTGCATGTTGGCGTGGCTCAG 4497 28 96.4 17 ...........................N NNNNNNNNNNNNNNNNN Deletion [4453] 4452 28 92.9 33 NN.......................... CACCACCCACCTGCTTCGTCCCTCCGAGGTGGG 4391 28 100.0 33 ............................ CTGGGCGTGGTACGACGCCAAGGGTGGACTCGT 4330 28 100.0 34 ............................ CACCTCGTGATGCGCGACGAGGACGGGGCCGTGC 4268 28 96.4 33 ......................C..... GCCAGGTTGTCGGCGCTCTTCGGCATCCTCGGC 4207 28 82.1 33 A.C.....T...G........T...... CATGTTGGGGTAGAAGGCCCGCGTGATCTCCAT 4146 28 92.9 0 .............C..........G... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 96.4 32 GTGAGCCCCGCGCGAGCGGGGATGAGCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AGCATAGGTGGCCATGTGCGGCCCGCTGCCGTTCATGCGCGCCGTGCGCCGCACCCTCATGGAAAAGGGCGTGGACCCCCGCAACATCTCCTACGAGGTGTTCGGCCCGGACCTGTGGGCCCAGGACCCGGACAACGACGCCGCCGAGCAGAAGGTGCAGCTGAACGCCGCTCTGGCCTGACCTTCCCTGTGCTCCACCGGGGCCTCCTCCGCGCCGTGCGGGGGAGGCCCCAACATTTGGTCAAGACCTCGGCAGGAGTCCGTCTGCGGCCTTGAGGGGCCCTGTGGCGCAACGCACGATGGCGGGGCCGGAGCCCCCTCCCTGCGCCGGCCCCGCCCAGCGGGCGGTCCCCCATCCAAGGAGAAAGACCATGCGTCGCACAACGCTGAGCGCCCTCATCGCCTCCCCGGTGGCCGCCGTCTCGCTGGCGGGCCTGGCCCTGTCGTCCACCGCCATGGCCGACAGCCCCGACCTCGGCCCCGAGTCGGCCGCCGTCGTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCGAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7710-5742 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV824508.1 Kytococcus sp. HMSC28H12 Scaffold427, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================================================== ================== 7709 26 92.9 33 --.......................... GGTCGTGGGCACGGTGCTGGTCGGCGCGGTGAC 7650 28 100.0 33 ............................ CCTGAGCGAGGCGAACCTTTCCGGCATGGACTT 7589 28 100.0 33 ............................ CGCGACCTGCAGCCACGGCCGCTCACGCAGCGC 7528 28 96.4 17 ...........................N NNNNNNNNNNNNNNNNN Deletion [7484] 7483 28 92.9 33 NN.......................... GTTCCAGGCGCTCGGCTCGCGGTCGAGGTCGCT 7422 28 100.0 32 ............................ CTTTACGAAGGCGACTCCCTCGCCATGCTCCA 7362 28 100.0 33 ............................ GTCTGTTGGCTGGGGGTCGCACTCCTACCTCCA 7301 28 100.0 33 ............................ GTTGGAGACCCGCGGGCTCCTCGCCGACCTGCC 7240 28 100.0 33 ............................ CACCGTGGTCTGGGACTGGCCGGGCTCGGTGAA 7179 28 100.0 79 ............................ CACCGACCCCACCAACGAGCAGGCATGGACCGGGTGAGCCCCGCGCGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNN 7072 28 100.0 33 ............................ CATGGGGGCCGGGAGGGTTCGCATCGCGTGCAG 7011 28 100.0 33 ............................ CGCCCTGCGCATCACCATGAAGGACGGGACAAC 6950 28 100.0 33 ............................ CGTGATCGCCGTGGTGCGGTCGGGGTTGTCTAC 6889 28 100.0 33 ............................ CGTGTCGCCGGCCTCAGGGTCCACCGGCGGCAT 6828 28 100.0 33 ............................ GGAGACGCCCTCCATGCGGAGGGGGCTGGCCGG 6767 28 100.0 33 ............................ CTGGGCGCGGAACACGGCCACGGTGTCCACGAC 6706 28 96.4 20 ...........................N NNNNNNNNNNNNNNNNNNNC Deletion [6659] 6658 28 100.0 33 ............................ GCACACCTAGGAGCCACCGCCCCCATGCACACC 6597 28 100.0 33 ............................ CCCACGGCATCGCCGTGACGAAAGAGGAGTTGA 6536 28 100.0 33 ............................ GGTCTCGGAGGTCTGGCGGCCCCGGTGGCGGAA 6475 28 100.0 33 ............................ CACCTCGTGGGAGGTCCGGAGGGGGACGGCGTG 6414 28 100.0 33 ............................ CCGGGGGCGGCGACCCGACCCCTCGCGCGTCCA 6353 28 92.9 79 ..........................NN NNNNNNNNNNNNNNNNNNGTGAGCCCCGCGCGAGCGGGGATGAGCCCTCGTCGCCCGGGTTCACGTCCTTCACGCCCGC 6246 28 100.0 33 ............................ GTCGTCGGCGTCGTCGCCCAGGGCGGGGATGAT 6185 28 100.0 33 ............................ GTGGCCGGTGACGCCCTCGAACGCGTCCCACTC 6124 28 100.0 20 ............................ CNNNNNNNNNNNNNNNNNNN Deletion [6077] 6076 28 96.4 34 N........................... CCCGCCCTCCCCCTCCCCCGCATGGGACGCGTTC 6014 28 100.0 33 ............................ GTCACCGTCTTCTTCTTGGTCATGATCTGTCCT 5953 28 100.0 33 ............................ GTGCTCGCGGCGGGTGGCGAGCCGGTCGGACTG 5892 28 100.0 33 ............................ CAGGAACTCCCCCGGCGCGCGAACATCCAGGAG 5831 28 100.0 34 ............................ ACACCCCGGAGCCCTCGTTCTGAGAGACCCGGGC 5769 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =============================================================================== ================== 32 28 99.0 35 GTGAGCCCCGCGCGAGCGGGGATGAGCC # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCGAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //