Array 1 5641-6799 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJUO02000002.1 Staphylococcus pseudintermedius strain 111N Contig_2_111N_con, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 5641 36 100.0 30 .................................... ATTCTCACCCCCTTTCAAGTCATCTTCAGT 5707 36 100.0 30 .................................... CACTAGAGTCTATTTCAACACCATTCATGA 5773 36 100.0 31 .................................... TATGAACCCCCTCGAGAGGAACTTATATCCC 5840 36 100.0 30 .................................... CAACTCTCGAATATAAAAAGGCTCAGTGTC 5906 36 100.0 30 .................................... AGTAATTTGTCGCCTAATTCCCCTAAAGTT 5972 36 100.0 30 .................................... GTGGTGTAGTATTCCAAAGCTACAACATTA 6038 36 100.0 30 .................................... TGGCATCTCTACTAATTTGCCATCACGTCC 6104 36 100.0 30 .................................... GACCTGATGTGTAGGTTTAAAAAACCTTTC 6170 36 100.0 30 .................................... TGAGTGTCGAAGTTGGTTCACAACAATTCA 6236 36 100.0 30 .................................... TCCATTTCCTCTTCAATCATTTGTTCATAT 6302 36 100.0 30 .................................... GGGCAATGCTTATCAAGCTGCAATCAATGC 6368 36 100.0 30 .................................... GTCGAAGAAAAAGTTAACCGCAATGTTAAC 6434 36 100.0 30 .................................... AAACTTATGAAAATTTAAATGTTAAACGTT 6500 36 100.0 30 .................................... GCAGTAGAACAAATTAATACGCGGCCACGT 6566 36 100.0 30 .................................... GAGCATCACACCGTCACGTCGAAATATGTC 6632 36 100.0 30 .................................... ACAACTGCCTTAATCTTCTTGTCAGTAACA 6698 36 97.2 30 ...................................T TTCATAATAAATAAACATATAAACTAAAAA 6764 35 75.0 0 ........-....T.T.TT...A..G.....C...T | A [6776] ========== ====== ====== ====== ==================================== =============================== ================== 18 36 98.5 30 GTTTTAGTACTCTGTCAAATTAGGTATAAGTGATAC # Left flank : TATGTTTGGTACGTGTGCAGGCTTAATTGTCCTTGCGAAAGATATCGTAGGCGAAGAAGGCTATCTGCAAAAGTTAGATATTACAGTAGAGCGTAATTCATTCGGGCGCCAAGTCGATAGTTTCGAGTCTGAACTACACATTAAAGGTATTGATCAACCGATTGAAGGTGTTTTTATTCGTGCACCCCATATTCAATCAACAGAAGCAGCCGTTGATGTATTAGGGACGATTGATGACAAAATTATCGCTGTACAACAAGGTCGTTATTTAGGCGTATCGTTCCACCCAGAATTAACAGATGATTATCGCATGACACAATATTTTATAGAACATGTGATGCAGCAGTAGGAATAGATAACCTACAAAACACGTCTAAAGTTGAACCGCTATTCAAAATTAGGCGTGTTTTTTATAAGGTTTAAATGGCTATTGTACGCATTATTATTGGTTTTTAAAATAAGTTGCTTCGTTTGATAGATACTGTATAATGAAGCTAGAG # Right flank : TATAGTACATATTGTTACTTAAAAGAAATTCTTTATTTCACATGAACTTAATAAGTGCAAGAAAATTTATGGAAAGGCTTGCAAAACACAGAATGTATGATACAATATAGTTGTAAGTGCTAAAGTGTGCTTATACCTAAATTGACAGAACCTACTAAAACAAGACATTATGTCGTGTTTATCCCGCTAATCTATTAGTGGGATTTTTCTATATCAAGTGATGAATGCGTAGGTTGGGAAAGAATGGGGGAAGATATATGAAAGAAAGATACATATTAGGACTGGATATTGGCATTACTTCTGTCGGTTATGGCATTATTAATAGTCAAACACGAGAAGTGATAGATGCAGGTGTTCGGTTGTTTCCAGAAGCAAATGTTGAAAACAATGAAGGACGTAGAAGTAAAAGGGGGGCACGTCGACTTAAACGAAGACGTATTCATCGCTTGGATCGCATCAAACAATTGTTGCATGAAGTGGGAATAATCGATGGTCAAGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTCAAATTAGGTATAAGTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 140828-142439 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJUO02000005.1 Staphylococcus pseudintermedius strain 111N Contig_5_111N_con, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 140828 36 100.0 29 .................................... GCAGGAATCGGTTTTGTCCTGTATGCGCG 140893 36 100.0 31 .................................... CATTTATTGCGTATGAAGAAGGTCAAGAAGA 140960 36 100.0 29 .................................... GAAAAGTTTAATTCCTACTTTAGTAACTT 141025 36 100.0 30 .................................... TTTACATTGCTAACGAAGGCTTATCAATTG 141091 36 100.0 30 .................................... TGCAGGTTAGTTTCGGCGCACAACGTGTGC 141157 36 100.0 29 .................................... GTAACCTTGTATTGAATTAAGCCGGAATA 141222 36 100.0 29 .................................... GAAAACGTGCAATGCAACAAATTGCTGAT 141287 36 97.2 29 ............................G....... TTAATTGATGTTATCGCAACAGGGTCGAG 141352 36 97.2 30 ............................G....... ATTCACCACGTGTCATCAATTCGCGCTCGT 141418 36 94.4 29 .......T....................G....... CGATAAAAGTAATCAAGATGTGGTCTTTA 141483 36 97.2 31 ............................G....... TGCTTTGCTTGTACTGGATATTAACGCTTGT 141550 36 97.2 30 ............................G....... ACAAGCGAACGGTTTACAGTGAGTGCGTTC 141616 36 97.2 30 ............................G....... GCGTTATCTGATGTATTGAAAGATACAGGT 141682 36 97.2 30 ............................G....... AATTCTCTTGTTTTTATTACACAATCGGTA 141748 36 97.2 29 ............................G....... CTTTCTAAAAAACGTTGATACGCTTCTTT 141813 36 97.2 29 ............................G....... ATCAAATTGCAATGCTGCAACCATGTGTA 141878 36 100.0 29 .................................... GTTAACTGAACTCGAGTGTTGGCGCTTGA 141943 36 100.0 30 .................................... ACGGACCTCGGTTAATATACGTATGGAATG 142009 36 100.0 30 .................................... GCCAAACCTGTAATGACATCAAGCGCCATC 142075 36 100.0 29 .................................... GAATACGCCGTCGTCTTACCGCTTGCAGT 142140 36 100.0 30 .................................... TAAACATGTTTTCTTTAATCGCAAGTACTT 142206 36 100.0 30 .................................... TTGGTTGCTATATGCAAAACATCAAGACAA 142272 36 100.0 29 .................................... CACATTGCGTGAACAAATCGAGGGCGTTA 142337 36 100.0 30 .................................... GATGGGAATCCATTTGCAACTGACAGGCGC 142403 36 86.1 0 ..........................AC.TC.T... | C [142436] ========== ====== ====== ====== ==================================== =============================== ================== 25 36 98.3 30 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACATATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //