Array 1 41910-40246 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNQ01000084.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CVM24388 SEEH4388_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 41909 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 41848 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 41787 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 41726 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 41659 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 41598 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 41537 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 41476 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 41415 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 41354 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 41293 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 41232 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 41171 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 41110 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 41049 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 40988 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 40927 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 40866 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 40805 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 40702 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 40641 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 40580 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 40519 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 40458 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 40397 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 40336 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 40275 29 96.6 0 A............................ | A [40248] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 59293-58167 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNQ01000084.1 Salmonella enterica subsp. enterica serovar Heidelberg str. CVM24388 SEEH4388_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59292 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 59231 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 59170 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 59109 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 59048 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 58987 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 58926 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 58865 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 58804 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 58743 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 58682 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 58621 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 58560 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 58499 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 58438 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 58377 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 58316 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 58255 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 58194 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //