Array 1 102137-101194 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGR01000002.1 Escherichia coli strain MOD1-EC5137 MOD1-EC5137_2_length_385545_cov_43.2319, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102136 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 102075 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 102014 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 101953 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 101892 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 101831 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 101770 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 101709 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 101648 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 101587 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 101526 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 101466 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 101405 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 101344 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 101283 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 101222 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129207-127836 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGR01000002.1 Escherichia coli strain MOD1-EC5137 MOD1-EC5137_2_length_385545_cov_43.2319, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 129206 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 129145 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 129084 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 129023 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 128962 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 128901 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 128840 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 128779 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 128718 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 128657 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 128596 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 128535 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 128474 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 128413 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 128352 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 128291 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 128230 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 128169 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 128108 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 128047 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 127986 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 127925 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 127864 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //