Array 1 739245-737916 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEOI010000001.1 Listeria monocytogenes strain 462 N1_788871nt_15.861151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 739244 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 739178 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 739113 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 739049 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 738983 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [738974] 738915 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 738850 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 738785 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 738719 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 738655 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 738590 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 738525 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 738460 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 738397 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 738334 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 738268 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 738205 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 738140 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 738074 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 738009 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 737945 29 93.1 0 .......................C....C | A [737920] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 510317-513327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABEOI010000002.1 Listeria monocytogenes strain 462 N2_518755nt_18.159002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 510317 36 100.0 30 .................................... TCTCGACTTCGTAGCCATCCAGCCACGCAC 510383 36 100.0 30 .................................... GCATTAGCATGTTTTTTACTCCACTCAGCT 510449 36 100.0 30 .................................... TAAATTCTTTAATGATATTAATAAAGAAGT 510515 36 100.0 30 .................................... AGCATTTTTTATTGAAGTGAAAAACGAGAT 510581 36 100.0 30 .................................... CTTGTTGGTAATTTATCACCTGTAGCAAGT 510647 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 510713 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 510779 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 510845 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 510911 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 510977 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 511043 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 511109 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 511175 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 511241 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 511307 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 511373 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 511439 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 511506 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 511572 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 511638 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 511704 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 511770 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 511836 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 511902 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 511968 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 512034 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 512100 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 512166 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 512232 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 512298 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 512364 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 512430 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 512496 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 512562 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 512628 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512694 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512760 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 512826 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 512892 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 512958 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 513024 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 513091 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 513157 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 513223 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 513289 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [513314,513320,513323] ========== ====== ====== ====== ==================================== =============================== ================== 46 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //