Array 1 3741269-3739138 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRMH01000001.1 Pectobacterium actinidiae strain KKH3 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3741268 28 100.0 32 ............................ CTAACAATCGCGACTTCCCGGCCGCGTTCATT 3741208 28 100.0 33 ............................ GCGCACGTTCAGCGATGCGGGAACGGCGCTCAA 3741147 28 100.0 32 ............................ TTATATCCCAGCGCTCGCAACTTTCTGGCCTG 3741087 28 100.0 32 ............................ GACAATTTGGTGATCGGTTTCTCATTAGCTAT 3741027 28 100.0 32 ............................ TATCTGCCGGTCAGCGATACGGCCAATTTTAC 3740967 28 100.0 32 ............................ CGCCTGAGGTGTAACTCCAGCTATTCGGGACA 3740907 28 100.0 32 ............................ GCGTGGAGCCTGGTAAATCTGCTTAGGCAATT 3740847 28 100.0 32 ............................ CACTCGCGCATCCTGCGGGTTAGCAGTACCGC 3740787 28 100.0 32 ............................ ACCAGCGCATACAACGCGCTAAAGGCGAAAAA 3740727 28 100.0 32 ............................ ATCCTGCCGACCGGGTGATATTGCATGACCAG 3740667 28 100.0 32 ............................ AGTCCAACACCGCCAGCCAACCCCGCGAATTA 3740607 28 100.0 33 ............................ GAACAGCCATTTCACCCACTTTGGTGCATCCAT 3740546 28 100.0 32 ............................ AACATCGCGGCACGAAACGAGGCACTTTCAGG 3740486 28 100.0 32 ............................ AACACCAGAAGCTATCGCGGCACGAAACGAGG 3740426 28 100.0 32 ............................ TGAGTATCAGATCACGCCGCTCTACGCCGCAT 3740366 28 100.0 32 ............................ AAACATTTTCGCCATCGGGACGGCAACCGAAG 3740306 28 100.0 32 ............................ AATCAGCTAATAAATCAACTCATAGCAGGAAA 3740246 28 100.0 32 ............................ AGCACCGTGATGACCACGGTAACAAGCTCGCT 3740186 28 100.0 32 ............................ ACCAACAGAATTGACTCGAGTTCGATGATGCG 3740126 28 100.0 32 ............................ CGGTACTGCGTCGTAACTACACAGCAGACAGT 3740066 28 100.0 32 ............................ CCACAGTTGTCTTTCGACACGGCAGCGACTGC 3740006 28 100.0 32 ............................ GTAATGCATCATGCGGGTGATTCGATCAAACC 3739946 28 100.0 33 ............................ AGTTGTCCGGTAAGGATGGTGCAGCATGAAAAT 3739885 28 100.0 32 ............................ GGTGATAATTGATGAACGGGTATCACGGATGA 3739825 28 100.0 32 ............................ TATGACGATGCGGATATGGCTCGGGCAATGGC 3739765 28 100.0 32 ............................ AACACATTTACAGCGCGAAAAGGCGTTGCCAG 3739705 28 100.0 32 ............................ TGGAATAATCCGCTCATCATCCTCTACCAGAA 3739645 28 100.0 32 ............................ TGGAAGAAGGCCGCGAATTCGCTGTGCGCGTT 3739585 28 100.0 32 ............................ GCGAACGCAAGGCTCAGTCTGTTCAGTGAGGG 3739525 28 100.0 32 ............................ GGGATAGATTCCGGCATCACGTCAACGTGGCG 3739465 28 100.0 32 ............................ AGATTGTTCACGTACAGCGTAACCGTCAGATC 3739405 28 100.0 32 ............................ TGTGAAGGCTGGGACTGCTGTTGGCTCATACT 3739345 28 100.0 32 ............................ GGCCGAATCCGAGTCGTATGGACCGTGCATTA 3739285 28 100.0 32 ............................ AACTTCAAACTCCCGTTTCCCCCATTTACTTG 3739225 28 100.0 32 ............................ TCAAGCCCTCGCGTGTAATCCAGCTCGGCAAA 3739165 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGTGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGATACCAGCGAATAAATCGCAGGCTAACTATTTGATAAGAAGAAATATAATCCTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACAGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGAGCGGGCTACA # Right flank : GTTATCCCACTGCGATTTCACTGCCTATACGGCAGTTCACCTACGACCTTAAGCGCTGCTGTCTGGCTATTATCGAGGTCGCGCTGCACCAAGTACTGAATACGTTTAACCCTTAAATAACACATGTTGATGCCCTTCTTCCGTAACGTTTTTAATTAATGTGTTATTTTTCGGGGAATTAAAAATTGCGTATTAAGCGTTATTCACATTTAAAAACCATAATTTTTCCGTTAAAGTGTTCTTACAGGGAAATAGTACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAGGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATCAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTCTAAAGACGTTATGTACACCAAACCCTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3749841-3751368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRMH01000001.1 Pectobacterium actinidiae strain KKH3 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3749841 28 100.0 32 ............................ AGATGAAGCAACTATCGAACGCCGAAGATGGC 3749901 28 100.0 32 ............................ GTCGTCAAAATCTCAATACGATTGGCGATGCT 3749961 28 100.0 32 ............................ AAAATTGCCGATCGCAGCCTGAACAGCACGCC 3750021 28 100.0 32 ............................ TTGCCGTTTAACTTTTTGATGAGCAAACCGGC 3750081 28 100.0 32 ............................ AGCTCGCCCGTTTTGGGGTTAAAGAACACGGC 3750141 28 100.0 32 ............................ TGCTGGTTTCTCTTGGGCTGGAAACTGATGCT 3750201 28 100.0 32 ............................ GTTATAGCAGTATTGATGCCCGTAGGCCGAAA 3750261 28 100.0 32 ............................ AACATCTATCCGTGAGATAGCGAAACACGATA 3750321 28 100.0 32 ............................ AGCGTAAAGCACGCGTCTATCCACCGACATCA 3750381 28 100.0 33 ............................ GATTAGTTGCGCCAAACGCTGACCTGACGCCAC 3750442 28 100.0 32 ............................ CTTGTCGCGATTCTTCCAGTAGCTTACGGCCA 3750502 28 100.0 32 ............................ TCATGCAGCAGGATGGCGTCATGATCCATTGC 3750562 28 100.0 32 ............................ AGAACGAGGAAATAGTCTTGTTCCAGATTGTC 3750622 28 100.0 32 ............................ AAGATGCCGTTACGACCACGGCGGTTGATTTC 3750682 28 100.0 32 ............................ TCATCATCAGTCTTGGCGTTAGCCAGACCGTA 3750742 28 100.0 32 ............................ AACAAGTAGCAGCAGGCGGAACAACGGCAACT 3750802 28 100.0 32 ............................ ACAGGTGATGGTGTTATCTTCGAACACCAGGT 3750862 28 100.0 32 ............................ ACTGACATGCGGAATTACAACGAATACTCCAG 3750922 28 100.0 32 ............................ ACAGACGACACAGACGCATCGGGCAACGTAAC 3750982 28 96.4 32 .......A.................... GTACCGTGCCGTTCCTGGTCGAGCTGGCCAAC 3751042 28 100.0 32 ............................ ACAGCGCCACCAGTTCGCTTAACTTGCGATGC 3751102 28 100.0 32 ............................ CTAAAACGTGGGGAGGCTCATCACGCAGGGCT 3751162 28 100.0 32 ............................ GTGGCCGAGGCCGCAGAGTGGAACGGCAAGGC 3751222 28 100.0 32 ............................ CACGCGCCTTGATTCAACGCTGCTTTTTGTGG 3751282 28 89.3 32 .G.........T.....T.......... ATGACTGATAATGCGTTGGCTGTGGTATGGGG 3751342 27 82.1 0 ...A.........C.......-....TG | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCATCCCTGACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGCTCAAGAGTAGCGCCGAACGGTTACGCCGACGCTCAGTCAGCAAAGGCTGGTTGACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGCTTGTCCAACGGGCAAATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGATACCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCTGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAACCTTAACG # Right flank : GCTTATCAGAATGCGTCGCTGACGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGACTGCCGCCGTGGTTGCGATGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGTGCCGGCATGTCGTCACTCCCCTCATAAGTATGACGGTAATACGGTTCATCCTCCGGCACTAAGCGATTAAAGAAGCTCTCGAAATCCTGCCGTACCGTAGGGTCAGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACCTGCATCAACCCGACGTTTATCTGGCGCAGTGCAGTAACCTGCACCAATATTTCATCGGTCACCAGATGAAAGCCTCTGGCTTTTGGCTTCAGGCGGATTTCATACTGCGTCCACATCGTCGGCTTCCCTTTATCAGGCTTCACGCGCCAGAATAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //