Array 1 1012889-1013160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051396.1 Salmonella enterica subsp. enterica serovar Uganda strain CVM 22437 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1012889 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 1012950 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 1013011 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 1013072 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 1013133 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1023387-1025553 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051396.1 Salmonella enterica subsp. enterica serovar Uganda strain CVM 22437 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1023387 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 1023448 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 1023509 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 1023570 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 1023631 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 1023692 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 1023753 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 1023814 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 1023876 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 1023937 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 1023998 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 1024059 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 1024120 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 1024181 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 1024242 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 1024303 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 1024364 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 1024425 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 1024487 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 1024548 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 1024609 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 1024670 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 1024731 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 1024792 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 1024853 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 1024914 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 1024975 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 1025036 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 1025097 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 1025158 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 1025219 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 1025280 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 1025341 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 1025402 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 1025463 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 1025524 29 93.1 0 .............C.A............. | A [1025551] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //