Array 1 1627623-1622406 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014476.1 Methylomonas denitrificans strain FJG1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1627622 29 100.0 32 ............................. CCTTTCGACGTATCCAGCGCTTCTAGCACCAC 1627561 29 100.0 32 ............................. GCCGTGCAAACAGCACTCGATTTAATCAACAT 1627500 29 100.0 32 ............................. CAATCAAACCCAGACCTTACGGATGAAGAGCT 1627439 29 100.0 32 ............................. TATTCTGTCAGTGTGCCAAATTGGACTGGCCC 1627378 29 100.0 32 ............................. CGCACATGGGTACAAATTTATTTCAGACGCGC 1627317 29 100.0 32 ............................. CATCGGTTGTTGCCAGGTTTCGATCAAAGCTG 1627256 29 100.0 32 ............................. AGAACGTGCCGTAGTTGGTCGTATCCTCGCCT 1627195 29 100.0 32 ............................. CCACTTGTGTGCCAGCACATATTCACGCGCCG 1627134 29 100.0 32 ............................. CTCACCAGACGGAATATTTACGTCTATAAAAT 1627073 29 100.0 32 ............................. CCGGCGATGTGATAGAGCCGTTGCCATCTGTC 1627012 29 100.0 32 ............................. GCCGCAAACGCCTGGGCGGGCGCTTGCTGGAG 1626951 29 100.0 32 ............................. GTCCGCTGGCTAGCAAGCCAGGTCCGGAGCGA 1626890 29 100.0 32 ............................. CCAATAACATGCTCGAACAAACCGGCGGCGCG 1626829 29 100.0 32 ............................. TACGGGCGCGCGATATGCACGGCCGCTACAGC 1626768 29 100.0 32 ............................. TATTGTTCACATGTTTTAATTTGCCTTGGTTC 1626707 29 100.0 32 ............................. ATTCGACTAACTATGGCACCTTTTCTAGTGGT 1626646 29 100.0 32 ............................. GCGTGAGGGCAGATGAATCTGAAAGTAGAGCA 1626585 29 100.0 32 ............................. CATTGCCAGTGCGAGTCAATGAGTTTGATCCG 1626524 29 100.0 32 ............................. TAGCTGGTAAGTAAGTCATGAAATACACCTTC 1626463 29 100.0 33 ............................. TCGTTCAGCGCCGGCTGCGGCGGCATCGATTTG 1626401 29 100.0 32 ............................. GCGACTCGCGTGTTATCAGCGGATACCCAGTA 1626340 29 100.0 32 ............................. CGTTTTGCATCTATGCAAGCGTGTTGCACAAT 1626279 29 100.0 32 ............................. GCCCACGCAACACCGCCGGTACAGCGGCCAGG 1626218 29 100.0 32 ............................. TGGTTGTGCCAGGCGAAGATCCACAACAACCC 1626157 29 100.0 32 ............................. TTCTGCACGGCGGTGGTGCCTTCGTGCTCGTC 1626096 29 100.0 32 ............................. CCAATGGCATTTGTCAGGCCGCGAAACGCATT 1626035 29 100.0 32 ............................. GTCGCCAAATTACGTTACCAATTTCCCCTACA 1625974 29 100.0 32 ............................. ACGGCGGCGGTAGAGTCGATCTGTTGGAGGCT 1625913 29 100.0 32 ............................. ATATTGCAGCCGATGTTCCTTATCCGCATTCA 1625852 29 100.0 32 ............................. CAATTGGTCGAGAACGTCACGGCTGATCATTT 1625791 29 100.0 32 ............................. ATGATTGCTCGGCTGATGAAATCCACCAGCAA 1625730 29 100.0 32 ............................. AAGAAAGAAGCTGGTTCATCCCCACTGACGTG 1625669 29 100.0 32 ............................. GCATGTGGGACGTTACCACGATTTGGGCCGCC 1625608 29 100.0 32 ............................. CCCATCATCACGTTAACAATCTTGCGGCTAAA 1625547 29 100.0 32 ............................. TCATCCTGCAAAAAATCCTGGGTGAAATGGGC 1625486 29 100.0 32 ............................. TCGGAGCCTCCGACGGGATCGCCGCCATTAGC 1625425 29 100.0 32 ............................. CAGTCATCAAACAAGAAACCGACCGACGCGTA 1625364 29 100.0 32 ............................. CACGAAGGCCAGCTGACAGCGGACACCCAACA 1625303 29 100.0 32 ............................. TCTTGAAACAGCATAGGCAAGGTCATATAAGC 1625242 29 100.0 32 ............................. GCATTTATTACCCAGCAGGAGGTGGCCCTGGC 1625181 29 100.0 32 ............................. TCGTCGAGCCATCGCCTGCACCAAATGTGGTG 1625120 29 100.0 32 ............................. TCACCGAGCTTGAAATCGGCAACGAAGACGTG 1625059 29 100.0 32 ............................. CCGCCGGCGGCGGCAGCATCCGTTATCAGACC 1624998 29 100.0 32 ............................. GCCGCGTGGGCGTCCTGGGACACTTCAAACAA 1624937 29 100.0 32 ............................. CCCCGAAAAACGACATATCCGGCATTACTCCC 1624876 29 100.0 32 ............................. AAATGTCTAGAGCTTCGCAAACATCCTTGGCA 1624815 29 100.0 32 ............................. ACGTGGTATTGCAGTTGCAATGACTCGGTGCA 1624754 29 100.0 32 ............................. CCAACGCCGTTACCAACCGCCCGTGCAGGCCG 1624693 29 100.0 32 ............................. CGTTGGCTGTGCGGATATAGCCATAATAAATA 1624632 29 100.0 33 ............................. GCCGTCAGCTACACCGGGCAGGCCGGCCTCAAC 1624570 29 100.0 32 ............................. CCTCATTTGGAGAAACGACTGAATCTTTCCGA 1624509 29 100.0 32 ............................. CCTGGAGCCAAATCAACGCCCAATCGGTGGCC 1624448 29 100.0 32 ............................. CCTTGAAGACCATCTTTCGGCGCTATCACATG 1624387 29 100.0 32 ............................. TCTTCGGCGGCAATGGCGAGGATATTGGCGAA 1624326 29 100.0 32 ............................. TTTGGTGGTTAACGACAAATATCCCGCGAATC 1624265 29 100.0 32 ............................. TCCTTGCTGCCGATGTTGCCGACCGGGATGAT 1624204 29 100.0 32 ............................. CCGCCGTCATTCGGCATATAAGACGCCGGAAT 1624143 29 100.0 32 ............................. GAGGCCGTCAAAACCCGGATGGCCGAGGATAA 1624082 29 100.0 32 ............................. TACGCGGCGATGGACGCTAAAACCGAGTGGGA 1624021 29 100.0 32 ............................. CCAACCAACACAATATGCGGCAACAGATACAG 1623960 29 100.0 32 ............................. CCCTCGCAGCATCGGACGCACCAACTGACGCC 1623899 29 100.0 32 ............................. GTCAAAATGATCGGCTTCGTTCGCCTGGTCAT 1623838 29 100.0 32 ............................. CAATAGCGGCGTCACTCGGACCGATTGAACAA 1623777 29 100.0 32 ............................. TCATCAACGGCATTATCAAGTTACCCAAGGCA 1623716 29 100.0 32 ............................. ACGCCAAGGGCGAATTAAGCAAGCGCGCGCTG 1623655 29 100.0 32 ............................. TAGCCGGCCCGAACAATCGCAGACCGATTGAC 1623594 29 100.0 32 ............................. TCACCGTGAAAGCCGCCGGCGTCGTCGTCGTG 1623533 29 100.0 32 ............................. GGTTCGCCTGATATGTACGAGCCGAAAACCGA 1623472 29 100.0 32 ............................. CAATCGAATATCAATTGCTCGATGATGGCCAG 1623411 29 100.0 33 ............................. GGGTATGCCGCACCGACGAACTGTACGAACAAA 1623349 29 100.0 32 ............................. GTGATTTTGCCGACTCGATAGAGCGCGCTGCA 1623288 29 100.0 32 ............................. CTGATTTTGAATTTCGTCGTAATGCTTCTGTA 1623227 29 100.0 32 ............................. GCGGGGCGGGTTTCCGGAGCTTAACCGAGGCC 1623166 29 100.0 32 ............................. GCCGTCAAGGACCGCCCGTTTAAACTGATCAC 1623105 29 100.0 32 ............................. CGGAGATGATGAAGCTGGTGGTCAACCGTCCA 1623044 29 100.0 32 ............................. CCCTTGGGTTCGTTAGAGCCCAAGAGTGGTTG 1622983 29 100.0 32 ............................. ACTTGGTGCAGCTTAACGTACCGTTGTCAGGT 1622922 29 100.0 32 ............................. GCGCGTGATGCTCTGTCAGCCGGCGGCACTAT 1622861 29 100.0 32 ............................. ACTTTGAACCGGTACAGGCACCGGCGCCTATC 1622800 29 100.0 32 ............................. TCCGGAGGATGCCGCCGAGTGGGCGGTCAATG 1622739 29 100.0 32 ............................. CGCGCGGATGGCCGGATGAAACGCGCCGAAGC 1622678 29 100.0 32 ............................. CGACTGGGGTTGTTAGGGTCTTGTTCGCAGAA 1622617 29 96.6 32 ...........................A. GCTGGCACAACCTTTGCTGGCTAATTGGTACA 1622556 29 100.0 32 ............................. ATTGCGACCGACATGATGCTGGCTGATGAGCT 1622495 29 89.7 32 ..............T........T....T TACGCCATCAATATGGCCGATTCTAAAGCCTC 1622434 29 93.1 0 ..............T........T..... | ========== ====== ====== ====== ============================= ================================= ================== 86 29 99.8 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CGGCCATTCCTAACGCGGAGAGCATCGGAGATGTTGGTCATCGTAGTTGAAAACGTTCCGCCTAGGCTGCGTGGGCGCTTGGCGGTATGGCTAATCGAAATTCGCGCCGGTGTCTATGTCGGCGATTTGTCGGCCAAGGTGCGCGAGATGATCTGGTCGCAAATCGAGGATGGGCTGGAAGAAGGCAACGCGGCGATGGCTTGGTCCACCAACACCGAATCGGGTTTCGATTTTATGACATTGGGTAAAAATCGCCGGCTGCCGGTAGAACTGGACGGCTTGAAACTGGTGTCGTTTTTTCCGCCGGAAGATGCCGAATTGTCTCCCTCGCCCTCGGAGAGAGGGCCGGGATGAGGGTGAAATGCGCACTACATTCCTGTTGGGGCATAGGGCGCTGTAAGGGCTTTCGTCAGCTTTTTAACAACTTGGAAAATGCCGAAAAAATCGGTAGAAAATTAGACGGGTTGTTTCCGTTTATCTAACAATAAGTTAGGATTAGT # Right flank : CGACATAGGCGGAGCGATTGGCTATGGCCTTGGCGATCCCCCCCTGCGGGGATAAACCTTGAGTCCCGAAGTTTGAGGCATTCGAGCGGGGATTCTAGGTATGTAAACCAAATACGTTCGATAAGGTGGCGAATTAATAAATTGAAGTTTTTAGTCGGGTAAAGGTACGCGAAGGCGAATGTCAAATATCCTGTACAGTCTTAAGCAACTTTACGTGCATGACATAGTTAGGATTCATGCCGGGCGTGAGATCAAAGCGGATGGGGGGTGTCAAAATGGCGCGCCCGAGAGGATTCGAACCTCTGGCCTCAGCCTCCGGAGGGCTGCGCTCTATCCAGCTGAGCTACGGGCGCAATGTGATGTGCGGTCAATCAGTACAATCTTTCGGTCAAGCGGTATGGACCGTTACCCTTATCCCGAAGGACTGTTCCCGCAGGGCCAATCAAGTAGCCTAGGGGGGCATCTAAGGTAAGAGCGCCATTATAAGATTAAATGCCGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //