Array 1 90811-90003 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMW01000017.1 Photobacterium phosphoreum strain FS.2.2 CFSAN065482_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 90810 28 100.0 33 ............................ GAAAAAATTGATTTTAAAGGCACGACTAATCAA 90749 28 100.0 32 ............................ TGCCCCCGTATTAAGCTTATGATACCGCTAGA 90689 28 100.0 32 ............................ AATAGTAAGATTCAAAATATAGCTGACTCAGT 90629 28 100.0 32 ............................ TATCCTATAGGCATTGTTAAACAGGCAATTCG 90569 28 100.0 32 ............................ CTGATGATTTGCCGATACACACACTGCCATTT 90509 28 100.0 32 ............................ TTAGGTAGTGCTACGGTTTTATCATCGTAAAC 90449 28 100.0 32 ............................ GTGTCAACTTCTTCTTTTTTCGGGTGCCAAGC 90389 28 100.0 32 ............................ AAAGCAGTATTAATTTAAACATGGTCACAACC 90329 28 100.0 32 ............................ AACCGCATGGATGACTTCCGGGATCAACTAGC 90269 28 100.0 32 ............................ AGCGTGAAGAAAAGGCAAAAGCTGAACGTGAA 90209 28 100.0 32 ............................ TTGATACTGTTGTAAAATCCATTCACATTCGT 90149 28 100.0 32 ............................ CATACATCAATGCCTGATCTCTTGCTGCAGTT 90089 28 100.0 32 ............................ TCCTGAACCAGTGCGTAATCCTCAAGCGCCGT 90029 27 82.1 0 ...........T........T..T-..T | ========== ====== ====== ====== ============================ ================================= ================== 14 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTACTTCATTGGCTGAAAATAAGGGCGTTCCGCCACCACCGCAAAAACCAACTAGCACGCCAGCTTTAGCTAATTCGCGCATTGCAGCTTGGGTAATCGATGTGCCTGTTCCGAGCATTATGGCGGTCGTGTTTGCTATAGGGATATTCCAATATAACGATTGCTTACCTTCGTCGGTGACATATTCAACCCGCCCACCATTCACTAACACACGACAATGTTGTAAATAATAAAGATTGGCACGTTTTGAATGAATAATGGTTTTCAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCGGTCACCAACAGTAAAAAACGCATTATATACATAGATACACATAATGCGTTTAGAGTGTAATCACAAATACCCTTTTTATTTGGTAACTATTCAGGCTATATAAAACAACAACTTAAAACATCAGTTAAAAAAAGGGTTTTTGGTGGGAATTTACTGTTTGGCTTTTATAAGCAATCACTTATACTAACTTTGCTCCA # Right flank : TACTGGCAGCAGCCATGGCTTCTTTTATTTCATCTGAACCATAACCTTTTGATGAAAGATAGGCATAGGCTTTACTTTTATCTTTAAAATTCGACAGGTCAAACCGCTTTTTCGCTAACACTAATTGGCAGTTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAAAAGACTTGCTCAAGGTTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTAATCACTGTTTTGCCTTTGAGCTTACGGACTAACTTCAATACTTCTGTTTCAAGATCAGCATTCATGCCTTTGATTTTTGCTTTGGTTAATAACGTATCGGCAGCATCGTGTTCCGCAATCGCTCTTGAAATATCTTGAAAACTGTACCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATTATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAACTAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 99358-100525 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMW01000017.1 Photobacterium phosphoreum strain FS.2.2 CFSAN065482_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 99358 28 100.0 32 ............................ GTCACGGTTGGTTGCGCTTCTGAGCCGCCTCG 99418 28 100.0 32 ............................ AAGAATTAACATTAATCACACAAACATAACAT 99478 28 100.0 32 ............................ AATATCAAGGATATAATTAAACACCGTACAAT 99538 28 100.0 32 ............................ ACCTAAGTTAGTAACAGTAGTTGTTGACGAAA 99598 28 100.0 32 ............................ GTAAAATTGAAGCAGTTCAAAAGCAACTTAAA 99658 28 100.0 32 ............................ CTATTGTTGATGTTGTTAAAGTTAAGCATCCA 99718 28 100.0 32 ............................ AAATTCAGAGGAAGATTAGTAACTATTTTCCT 99778 28 100.0 32 ............................ ATCGCCGTATCACCATCAAAACGACAAACATA 99838 28 100.0 32 ............................ TTGAATATCCTAACTTCTTTATTACCAAGGTT 99898 28 100.0 32 ............................ AAGAATTAGAAGCGAAATTGTGTAAAAGCTTT 99958 28 100.0 32 ............................ TCTTCGTTTAATGTTGGCTTTTGTTTGTTTTT 100018 28 100.0 32 ............................ CGTTGATATCGATCTAACTCTCTTCAGGGCAC 100078 28 100.0 32 ............................ GTCAACATTAACCATAGGCAACTCTTCAACGG 100138 28 100.0 32 ............................ TGAAGGTGAAAAAACCGTGGTTCTTTTCGTGG 100198 28 100.0 32 ............................ GGTATAATTACCGATAAGATGAAATTCTAGGG 100258 28 100.0 32 ............................ AGAATTTATCGCGAGCGGACGGGTAACGAAAT 100318 28 100.0 32 ............................ AGAACTATCAATAATCAATTTCATGCTACCCC 100378 28 100.0 32 ............................ AATAGCGGTGCGAATACTTGGTTTGAATGGAC 100438 28 100.0 32 ............................ AACAACGGTGCCAGCGCCAGTGGTTATTGCTA 100498 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACCCGTGTTACGACTATTACGGCAATTCCGAGTGACATCAAAGGTTATCAAACCGTCAAGCGTGTGCAGACCAAAAGTGCCAATAATAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCAGATGAAGCGATCCATGCCGTTCCTGATACAGCAGAGCGTAAGTTAACGTTACCTTATGTTCAAATACAGAGTTTATCTAATCAGAATGTTATGCGGGTATTTATTGAGCATAGCAAGGTGGTGAGTGATGCAACGGATGGTGTATTTAGTAGTTATGGATTAAGTGCCACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTATTCATTTAACCCTTTTTTTTAGCCTTTATTCGTTGCATTTAAAATCAATGAGTTATAAGTGATGAATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAACTAAACAATCGCTTATTATAGTTTAGCTTCA # Right flank : ATAACTAAAGTACACCGCGAACGTATTCTGCTTATTCACTGCCATATAGGTAGACATATGCGTTAGCCGCATGTTTATTCCATCTGACAAACACAAAACATTTCGCTAATAAACCATATTATTCATATTGTTAATAACTGTTTTCTAAATCGTTGTAGGTTGGGGCAGCGATGTTTACTATGTGCTACAAAGGATTTGTTGTTCGGTAAAATAAATGAAGAAAGATAAATACAATAATATTGCGGATCATATTTTTAAAGTAGATGCAGTAAAAATAGCGGTTTATGAGGTTATTACGCATAAGATGACAGCGTACAGAGCTGAGATTGTGTATGGCGTCACACCGAATACGTTGAATCGTTACGTTAAAAAATTCAATGCCGAGTTAACTTATTTACAAGCTTTAGGTTTAAAAGAAAAATAAATTATGTAAAGTCCAGTACCTACTGGACTTTACATCAGTGTGATAATGCTGCTTCATTATTCTCTCGTTCAAATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //