Array 1 339875-338581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWEZ010000002.1 Virgibacillus halodenitrificans strain VKM B-3472D NODE_2_length_574104_cov_180.759450, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 339874 32 100.0 34 ................................ ACACTGGAAGGCAGCAACGGATTAAAAGTCATAC 339808 32 100.0 34 ................................ TGTACGAACAAGGTATCGTTGCTGAAAAAGGAAA 339742 32 100.0 35 ................................ ACAAATAAATGGGAAAGTTGGACAACCATTCCTGC 339675 32 100.0 35 ................................ CTTATACAGATTTAGCTGAAAAAGGTTTTGTGGAA 339608 32 100.0 33 ................................ TCTTACATTCGTTGTAATAGTTTCATAGACTTT 339543 32 100.0 34 ................................ ATTAGGAATTGTAACTGGTAATGGCGGAGTAACT 339477 32 100.0 33 ................................ AACTTTAGCGACCAACTTTGTCAATTGGTTTAA 339412 32 100.0 33 ................................ TCAAACCAATCTACAAGCTAACTTAGGTTTAAC 339347 32 100.0 35 ................................ TTTTTATTTAGGATAAAGTTGTTTTATGTGCCCTT 339280 32 100.0 34 ................................ ATAACAACCGTAGATTGGTACGGAGTAAGAGGTA 339214 32 100.0 37 ................................ TCTTTTATGTCATTTCCGTTAAATGTGGAATCGTCAA 339145 32 100.0 34 ................................ CGTCGTAGTCGAGTGATTTCGGTATTTTCTTAAT 339079 32 100.0 34 ................................ CGTAGAAGAGTTTACCCGTACAATGATCGATTTA 339013 32 100.0 33 ................................ ATAGCGAAACATTTCTTGTCGTACAATTTGTGC 338948 32 100.0 36 ................................ TCTTTTTTACATACCAGGAGGTGACAAAATGGATAA 338880 32 100.0 36 ................................ AATGTCCGGGAATGCACCTTACCAGAGTATTTCCTG 338812 32 100.0 34 ................................ TTTTGGTAGATAGTTTATAGCCTTTTCGTATGCG 338746 32 100.0 35 ................................ CAGCGCCATACCACGTCCCATCTCCTTTCGTAGCT 338679 32 100.0 35 ................................ TCTGAACCACGATACATGCTTAATTTTTAGAATGC 338612 32 90.6 0 ...........C............G..C.... | ========== ====== ====== ====== ================================ ===================================== ================== 20 32 99.5 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TGAAAGTCCGAGCTATATTTCCCCATATCATGCAACATGCCAGCCAGACCCGCAATATGCTTTACACCTATTTTATGACCTATTGCTTCAGCGATTTCTTTTACGCCTAAAAGATGCTCTTCAATAGTTTGAATGGCTTGATCAGCTTCTCTAATATGTGCTACAAAACTCATACTTAACCTCCTCGCTAAAGTGACATTTATATACAATATTTACCACTTAGGACTATTTTACCACAATTTTTACGTAATGGAAGGTTATATTTTGAATATTTAATGAAAAGCAGATTTAATCATGTTATGGTATATGTGAAGATAACTTTACTATTAAAGTGCGAACCGCAAGCGCACAGAAAATCTCTAGGGGGTTCGCACCAATTAATAGAGAAATTTATGCTATTAAAAGGCTGTTTTCAGCTGTTTTTACTATTTTATAAATAAAATAATGCGATATTTGTGTAAAAAGGACCTATTTAATGGATAATTTCACCATAAATCGCT # Right flank : GGTTACAATACTCCAAAAGGTAAAGTTAACCTGTAATTTGAAATATCTAGGTTTGGGAATAAAAAAACACGCATTTCTCTGCGTGTTTTTTTCCTAGTTAATTTCCTTCGCTAAATTCGGAGCATGTAATCCTGCATCTTCAAATAACGGAGTCAATTTTTCATTTGTTGCATTAATTTTTTCTTCTGCTGCTGCAACGTCAATTTCTTCTTCGCCAAGTGCTTTTGAGTATGCTTCGTAAGCACCTTTTAATTCTGTCAAAGCATCATTAAATGTAGCTGTTTTTTCTTTATCCAGATCTTCTACTTTGATACCTTCAATTGCTGTAACAGCTTCTTCTGCTGCAGTTATAGCATCTTCTTTTGTTGTTTCAATTGTAGCTTCAGCCTCTGGATTATTTACAGATTCCACGTACATGTTAATTTTTGTTTGATATGGACGAACTGTTTTGGCAACATTTAGGTAATTGCTTAAAAGCGCCTTTTTAATTGCTGCTTCGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 348319-348950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWEZ010000002.1 Virgibacillus halodenitrificans strain VKM B-3472D NODE_2_length_574104_cov_180.759450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 348319 32 100.0 34 ................................ TTTGTATGGTTGGGTGCATAAGGATACAGGTGTG 348385 32 100.0 34 ................................ GTGATGGTATTGGTCGAGAGGATAAGTCTCATAA 348451 32 100.0 34 ................................ TGTACGAACAAGGTATCGTTGCTGAAAAAGGAAA 348517 32 100.0 36 ................................ TTGGTGAAGAGGTAAAGGACAAGCAACCCGATCCCC 348585 32 96.9 33 ...................T............ TCTGTATATTCTTCGTCCTCACCCTGAATAGAT 348650 32 100.0 35 ................................ TGTTAAGATGATTCCGCTTGGTAAAGGTTACAACA 348717 32 100.0 35 ................................ AAGATGTGAACACTCTATTGAAAGTGAATGAGAAA 348784 32 100.0 36 ................................ CTTTAGAAATACCAACCCTATCTCAATTGAAAGAAG 348852 32 100.0 35 ................................ ACTTTCAAAAGAAGCATGTCACTTATTCGTAACCC 348919 32 93.8 0 ...A...................A........ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.1 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TTTAGATGAATATCCTGTATTTCTGTGGAAGTAGGTGAAAAAATGTTAGTGTTAATCACTTACGATGTCAGTACGATAGATAGTGGGGGAGCCAAGAGATTAAGGAAAGTTTCTAAAATTTGTCAAAATTACGGGCAAAGGGTCCAGCATTCAGTATTTGAATGTGTGGTTGACTCCACTCAATTTGCTTCATTAAAAATTGAGTTGTCGAAAGTCATTAATGAAGACCGAGATAGTCTCCGGTTTTATAGGCTTGGTGATAATTATAAATCAAAAGTTGAACACTTAGGTGTTAAGGAATCAATTAGTATAGAAGATCCTTTAATTTTTTAGTGCGAAACTGAAGTGAACATGAATTTGCAGGGGGGTTCGCACCAATATACTTTAGAAAAATAGGTCATATATTCCTATTTATGTAAATCTTAGTGATAGATTTGAAAAAAATAGTTGTTATTTAGCTAAAAAGTTTATTTTTAGAGCGTTTTCATTGGAAATTCGCT # Right flank : TATAAGTCACAAATCGCACATGACAGCTTAAACACTGTCGCACTCTATATGCGTGGATTGAAGTTATCCAATCAAAGATTACGTCTAATCTTCTATCTGATCGCACTATATATGAGTGCTACAAAAATAAGTGCAAACCTCCCCGATATCAATTAAAATATAACCACAAGTTAAAAAACGGAGGTGCTAACCCTTGCACAAAGAAGATAAAAACTATATCGAAATATGGGGAGATAACGTTAAGTTACGAGACTTACTGCTATCCATGGTCTTATGTATTGTTTTTGCGCTCGGCGGATACATCTTGGCACCAGGAGATGCTCCTCAGCCACTCATACTAGGACTAATCGGTGGTGTGATTGGCTTCATTATAAGCAGTATCCTGATAAAACCTAAACGCCGGATTACCGTTCTCGGGGAGGAGGAACAATGATGGATACAGCTATTATTATTCAAATGATTCTAGCCAGTATGGGGGGAGCGCTTTTATATACACTAAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //