Array 1 386252-391565 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYYV01000001.1 Vibrio cholerae strain VN-10133 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 386252 28 100.0 32 ............................ TTCCTTGAAATTGCGCAGGACTACTCAAAGCA 386312 28 96.4 32 C........................... CGACAATCAAGGAGTATGATCTGCGAATGCTG 386372 28 100.0 32 ............................ GCATTGCGCCTGCCCTTGTGGTTTGCTACCAA 386432 28 100.0 32 ............................ TAGCCACGATTGACGGCAAAGAGATTGAGGCC 386492 28 100.0 33 ............................ CACGGGTTCCCGTTCACGCTTGATATGTTTGAT 386553 28 100.0 33 ............................ CCCTATTAAGTCGGCGTGGTTCATCATGATTTC 386614 28 100.0 32 ............................ CAATGGCGGACGCTGGCGAAAGGTTCTAATTA 386674 28 100.0 32 ............................ TAGAGCCCCTGATAGAGTGGCATCAAACAGAA 386734 28 100.0 32 ............................ TATATCGTTGAAGGTTCTGGAGAGGGCAAGCT 386794 28 100.0 32 ............................ ACACTCTTCTTGATATTGAAGTAAAGCTTGTT 386854 28 100.0 32 ............................ AGATTGCGAGATTACAAGACGAACGGCGAGCG 386914 28 100.0 32 ............................ GATCTCACTTCTTTAGAGGGATCGGCAACCTT 386974 28 100.0 32 ............................ AAAGGGTGCGCCGCAGTCGGTCAAGTGGCAGT 387034 28 100.0 32 ............................ TATCTTGACGTTCGTCATCATGTGGCAATCGC 387094 28 100.0 32 ............................ AAGGCTTTGATTTGATCGCTTGAGCCTTCCGC 387154 28 100.0 32 ............................ TTCCGTCGTCTCTTCCTCGAAAGAGTTGATTT 387214 28 100.0 32 ............................ CTTTCAAATGGCGTCATTGGTGATTACGAAGC 387274 28 100.0 32 ............................ GCCAGATTCTGATTGCACCATAATCAAAATCG 387334 28 100.0 32 ............................ GCACCACTGGCCAGTGTTGGCAGTAGGATGTT 387394 28 100.0 32 ............................ TCCACGAATGCCGCTATCGTACCTGACGTGAA 387454 28 100.0 32 ............................ TGATCATGGAGGCGCGTCTTTCTGGCGCACCT 387514 28 100.0 32 ............................ TTTCATTTCTTACTAGCTGCGGCCTTGTGCCT 387574 28 100.0 32 ............................ ACCCTGCGGCAGAACAACACCGTTCTTGATTG 387634 28 100.0 32 ............................ AGTGGACGAGTTGACGCAGAGGTGGAGCTGGG 387694 28 100.0 32 ............................ GCTTAGAACGGCGAGCAGCAAGCTTGCGTTTT 387754 28 100.0 32 ............................ TTTCAACGTGCCAGCCGTCGGATTGTCCGGCG 387814 28 100.0 32 ............................ CGCAGCAGAAAAAACAAAAAACTTTGCAGGGG 387874 28 100.0 32 ............................ TGATGCCATTGTTGCTGCTTTCGATTCAAAGC 387934 28 100.0 32 ............................ GCGCTCACGATGCAACACGGCCAAAGTTCTAT 387994 28 100.0 32 ............................ CCGATTGCACAGCGTCTATTGTTGCCGCTTGC 388054 28 100.0 32 ............................ TCGGGCAAGTGGGAAAAAATATCGACTCGTAA 388114 28 100.0 32 ............................ TGATCCGCCAAAATCCCGCCAAATCCCTATCT 388174 28 100.0 32 ............................ CAAAAAGTCCTTAACACTCTCGACGCACGTAT 388234 28 100.0 32 ............................ TAATGGGATAGTTGACGAATACAACCTATTGC 388294 28 100.0 32 ............................ TTATCTATACAACGGCGCTGTTTTTGTGGTGA 388354 28 100.0 33 ............................ ATTATCGGCGGTGGCGATACCTCGCGCCGCTTT 388415 28 100.0 32 ............................ CTGGGTTGGCAGGAACATTCCCAACGGTGACT 388475 28 100.0 32 ............................ TTAAAAATAGAGTTACAGCCCTTGGAATATCC 388535 28 100.0 32 ............................ AGCAAGTCAAGGGGCTACGCCAGCAACAGGAA 388595 28 100.0 32 ............................ TACTGTAGCTAAATAGATAAGGCTCCCCAGTT 388655 28 100.0 32 ............................ TCATTGATGAAGCCCAGACCTTTTTTCCTCCT 388715 28 100.0 32 ............................ TGAAAAAGTTTTGGAGCCATTCGCTTGATTAC 388775 28 100.0 32 ............................ CACCGGGTGTAACGAACGCCGTCAGACGCTGG 388835 28 100.0 33 ............................ CAATTGAGCTACGCTGGCTGCACGATTTACGCA 388896 28 100.0 32 ............................ GAACTTAGATTGTTTAAATTCGACTTCAAAGG 388956 28 100.0 32 ............................ TCGCGGAATGAGTCAGGCTAAACCTACTGCTG 389016 28 100.0 32 ............................ ATTTGTAATCGCTAGGCTTCCACGGGGTTTTC 389076 28 100.0 32 ............................ TGCATCACTGGCGATGCGGCCAATGGCATTAA 389136 28 100.0 32 ............................ TCTCGCGCTCAGTCTGAGGTATTCCGCCGCTA 389196 28 100.0 32 ............................ AGTCTGACGAGGCGAAAATCGTTTTCGATGGC 389256 28 100.0 32 ............................ GTAGCCGCGCATATCTAATGCGCCGTGAGTGG 389316 28 100.0 32 ............................ ATAATGAGCGGCGGACTAATTGCCATGTCGTT 389376 28 100.0 32 ............................ TTGCAATTCCAGTCGGCGATATAGCGGATTTA 389436 28 100.0 33 ............................ AGCAAAGAACGGCAAATTAACCTCGCTTTCCTC 389497 28 100.0 33 ............................ AATCGCCGCAGCAGCTAAGTTTGAATCCTCAAT 389558 28 100.0 32 ............................ GTTTGAACTCGACCTATATTTAAAACTCCGTC 389618 28 100.0 32 ............................ GTCAACCAAGTTGTATTCGCTAGCGTCTTTGC 389678 28 100.0 32 ............................ TCTCTGAAAAATATTACATTTTCCGGCTCATT 389738 28 100.0 32 ............................ TACTAACCTTAGCGGGTGGGGGTCCTGTGTGG 389798 28 100.0 32 ............................ TAATAAGACCGTAAAGAACAATATTCTTGCCG 389858 28 100.0 31 ............................ TTTTACGATCGCGCAAGCGAGATTCTGATTT 389917 28 100.0 32 ............................ GTAGCCAAAATGCTCAATGCCGATTTACTGGT 389977 28 100.0 32 ............................ CATTAAAACAAACCGTTCCCTATTTATTAATG 390037 28 100.0 32 ............................ AGTATTCGCTTGGGTTGGAAGCCGTCACGCTG 390097 28 100.0 32 ............................ TGACGTTTGGGGTAAGAAAACTAGGGCGAAAT 390157 28 100.0 32 ............................ GATACGGTTTACCAGCGACAAATCGACAAGGC 390217 28 100.0 32 ............................ TGTTCGCTTTTGTTGCTGTTTGCGCCCAAGCG 390277 28 100.0 32 ............................ AGTTTTATTTTTTGCACTAAGGCAGCTACTAA 390337 28 100.0 32 ............................ CATCGAGCCACCAGCTCTAAAAAGATCGTTTC 390397 28 100.0 32 ............................ TGTATCTTTGAGAACGCCACACTCAACAAGCT 390457 28 100.0 32 ............................ TTGTCCAGAAGTCCCTTCACTGCGTTTAAGTG 390517 28 100.0 32 ............................ TGCCGCTTTTTTCTTTGGTACGTATGGCTGAA 390577 28 100.0 32 ............................ ACCACGGGCATGATGTTCATTTAGTCACTCAA 390637 28 100.0 32 ............................ ACTTGCACCAAAGATAACGGCGAAGGATTCGG 390697 28 96.4 32 ...........C................ TTTTTGCTATCGAATTGCTACCTTTTGCCCTT 390757 28 96.4 32 ...........C................ TCCAAGCGAAAACCAAAAACCGAATCAATGAA 390817 28 96.4 32 ...........C................ GTCATGCGTCCACCACTATGATATTTTCAACG 390877 28 96.4 32 ...........C................ ACTATGGTATTGAATCACGGATTGAGGTGAAA 390937 28 96.4 32 ...........C................ AATACGCATCACAGATGCCAAATGTCGTTTAC 390997 28 96.4 32 ...........C................ AGACAGCCCAGCGGCGGCCAGCGTGTCTTTTA 391057 28 96.4 32 ...........C................ CACCAGCGCCATTTCTCCAGCCGTGCTGCATT 391117 28 96.4 33 ...........C................ AAAGAGCGCCTAAGCCGTGATGATCTTATTGCT 391178 28 96.4 32 ...........C................ TCGATCTGCACGTCTGGAATGTTCAGCGTTCT 391238 28 96.4 32 ...........C................ ATCATTAACGATGACATGCAGATGCTGCTCGA 391298 28 96.4 32 ...........C................ AAATTCAAATGGGCAAAATGGCGGTATCCATT 391358 28 96.4 32 ...........C................ GAAATATTGGGCATCGATGACACGCCATGCGA 391418 28 96.4 32 ...........C................ TGTAGGTGCAAAGAATTCTGCCAATTCTTCAA 391478 28 96.4 32 ...........C................ ACCCAAGCGCTCTAGAAAAGGTTGAATATCCG 391538 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 89 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAATCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTGCGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGACCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //