Array 1 200700-200270 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE999446.1 Prevotella conceptionensis 9403948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 200699 36 100.0 30 .................................... CGTCAATGATGCAGCAGGGTGGAGCAATGA 200633 36 100.0 29 .................................... GGATGCGCAAAAGCAATACACCTCCGAGG 200568 36 100.0 29 .................................... AGATTGGAGCGATAGTAGCAATACCAAGC 200503 36 100.0 30 .................................... CTTTGACGTGAAAGTCGGGCAGTGGTGGCT 200437 36 100.0 30 .................................... TAAATTCGGTGCTTATTGTCGATATGCCAG 200371 36 100.0 30 .................................... GCACGATTTGCCAGCAAGGTTAATAATTCT 200305 36 97.2 0 ..A................................. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.6 30 GTTGTGGTTTGATGTAGAGAAACGATATAATACAAC # Left flank : CATGACCACCGCCTCTCTGGAAAAATGTTTCTCAAAAGAAACCAATAAAATGCAATTACCGATACTCGAATGACATACGCCCGCCTTAATCGTTATCATATCATGTGGCTTTTTCTGATGTTCGACCTTCCTACGAATACTAAATTGGAACGCAAAGAATCCGTTCGTTTTAGGAAAGACCTTGAACGCGATGGTTTCACGATGTACCAATTTAGCGTATATGTACGCCATTGTGGCTCGTACGAGAGCATGAATGTACACATCAAGCGAGTCAAATCGCTTGCTCCCAACAAGGGCATGATTAGCATCCTCGCTGTAACCGATAAGCAATACTCCAATATTGTTAATGTGTGGGGCGAAGTTGCGGCAAAACAACAGGCAAAGCCCATTCAGTTGGAGTTTTTTTAGTAACTTTGTGTCATGATAAGCCTCATCAAGCAACTTCATATTACCCAGTAGGAGAATCAAGTAATTGATTACCAAGGATGTAAGTGGTATAT # Right flank : AGGTTGTGGAGAATAAATTAATGTGTTGTGGTTTGACGTAGAAACCGGCTAGACATTTAATGTTTCTATAAATAGGGAGGGGCTTGTTGCCTTTGTGTTCCAACACAAGATAAACACCCCTCTCATGTATGAAGTGGAGCGCAAATCAACTTGTTGGCTTATGAACTCGCGAAGACCCAGCAACTGGCAAGGACATGAACTCATCAAATTGCAATCGCAAGAACTCATCAACTATTCAACTCATCAACCATTTAACTCACAAACCATTTAACTCACAAACTGCTCAACTCACAAACTAATCAACTTACAAACGCACGACCTCACAAGCTCATCAACCAATCAGCTCATCAACCAATCACCTTGCAAACTCACAAACTCACGGCCTCACAACCGCATCAGCTCATCGGTTCATCAGTTCATCAACTCCCAACCTCACAAAACTTAATTTGTTGTTTTAATTTTACAATATCGTTCTAATTCTCGCTCCGTTCTAGCGAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGAGAAACGATATAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATGTAGAGAAACGATATAATACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 249-759 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE999508.1 Prevotella conceptionensis 9403948, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 249 47 91.5 30 T.....C..AC.................................... TAGCTTATAACATTGTCAATTGTCAACCAA GA [250] 328 47 100.0 30 ............................................... AAGAGTTTTTTCATCACTCAACCCAAACAA 405 47 100.0 30 ............................................... GGAGGGGCTTATAAACTCGCAGGCAATCAA 482 47 100.0 30 ............................................... ACTTGCCAATAAGACGATTTCACAAGTACA 559 47 100.0 30 ............................................... AAAACGAATTTAATTAAACAATAAATTGAA 636 47 100.0 30 ............................................... TATAACGAATATCGATGCAATTTCTTAGAT 713 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 7 47 98.8 30 GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Left flank : AAACTACCTGTTCTGCGGCAACAACGAGGGGGCGGAAAACAATGCCATCTTCTATACATTCATGGCCTGTTGCAGGGAGGCAAGGATAGAACCTTACGGATGGTTAAGGCACGTCTTAGCAAAACCTTTGCTGGACATGAAGGAGGATGAGTTGATTAAACTACTGCCCATAAACTGCAAATAACATAAAGCCCTTATATGACGCCCGTCATATAAGGGCTTTTTTGTGAAGTATCAATACGGCGAATT # Right flank : ATAGGTCTTACCTGCACGCATCGAAATAGGTTGTGATTTGCTTGAAAACTCGTACATTTGCAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.22%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 11113-8146 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE999452.1 Prevotella conceptionensis 9403948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 11112 47 100.0 30 ............................................... TGCGTTATTCTGCATTATGGTTGATATACT 11035 47 100.0 30 ............................................... TGCGTATGGCTCAATATATAATCTATTCTG 10958 47 100.0 29 ............................................... TGAAGACGGCCTAACGGGTGTTTACGAAA 10882 47 100.0 30 ............................................... AGACGAGATAAAGCAGATAATCGAGCAGCC 10805 47 100.0 30 ............................................... AAGAAGTTAACAACAGAGTTGACAATGTGA 10728 47 100.0 30 ............................................... CGGCTCTATTCTATGCGGCTCGGTCACATC 10651 47 100.0 30 ............................................... AAGGGCTAGATGTTATTAATATGGCATCTA 10574 47 100.0 29 ............................................... CATCGTTGCCACAGAAGTTGTAATCGGTA 10498 47 100.0 30 ............................................... CACTTGTCAAATTTACGTACATTAGTATCA 10421 47 100.0 30 ............................................... CCTTGTAAAGAAAGCACATGAGAAGTATAG 10344 47 100.0 29 ............................................... TCTAAACGCGTTTTGTATGTAAACGTATT 10268 47 100.0 30 ............................................... TGAATGGCTGCACGAAAAACAGCCTCACGA 10191 47 100.0 30 ............................................... AAGGAGTTTACCAATCCCATTGTATTCGTT 10114 47 100.0 30 ............................................... GAATTTTTGACCCAAACCCGCGTAAATTGG 10037 47 100.0 30 ............................................... CGCCTTGCGCTTTGCTCTTCTGTTTCGTCT 9960 47 100.0 30 ............................................... CAGAGATTCATTAACTTCATTCATAATCTA 9883 47 100.0 30 ............................................... AGGAAAGTTATGATAGAGCAAGAATATTTA 9806 47 100.0 30 ............................................... TTTATCTTATTAACCTAAATATAAATGTAA 9729 47 100.0 30 ............................................... TGTTTTTGCGAAACGCAAATAAGTCTTGCA 9652 47 100.0 29 ............................................... TAGGATTTTATTTGCTATCTTTGCACATA 9576 47 100.0 30 ............................................... CTTTGATGCCGTTGAATTTTGTTCATGGAG 9499 47 100.0 30 ............................................... TTTGGATGGAGGAGTACGACCCGAAAACAG 9422 47 100.0 30 ............................................... AGAATATCACGGTAAGGGAATTATCTCTAA 9345 47 100.0 30 ............................................... TAGATTTTGGCAGTGAGATAGACTTTCACA 9268 47 100.0 30 ............................................... GAAACCTCAGCGAAATGCGTTTCAGGGTCA 9191 47 100.0 30 ............................................... TATCCAAGTTACAAGGAATGTTGGGATAAA 9114 47 100.0 30 ............................................... GCACCATGCGCACAGCCAAGTAAGACAGCA 9037 47 100.0 30 ............................................... AACAATATTAAGAAAGGCTTTGAGGATGCT 8960 47 100.0 30 ............................................... CATTCAAGCGATAACCTAGGAAAAGATGTA 8883 47 100.0 30 ............................................... AATTGCCGAACGCATGGAACGTACGCATGC 8806 47 100.0 30 ............................................... ACAACAACTGCCTGCTGTAACTGCTCATCA 8729 47 100.0 30 ............................................... TTTGGTAAGACAAGTAGCCAAGAAATTGCT 8652 47 100.0 30 ............................................... TTCTGAAAAAGAACGGTTACGAGCAATAGT 8575 47 100.0 30 ............................................... TCGAATTTCAACGAGAGGGGAAACCCGATG 8498 47 100.0 29 ............................................... CCTTTATGAGCTGCTCGCCACCGAGTATG 8422 47 100.0 30 ............................................... CATAAGTCTTACCTGCACGCATAGATATAG 8345 47 100.0 29 ............................................... TTTTTGGGCATGGTTGGTAACTTGTTACC 8269 47 100.0 30 ............................................... TGTCCATCACGGCCTTCAGACACTGAAACA 8192 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 39 47 100.0 30 GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCGCCAACAACTGACAACGTTAATTTCACGGTCGAAGCCCT # Right flank : TTAAATACCATATCTATTTGTACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 13166-11816 **** Predicted by CRISPRDetect 2.4 *** >NZ_HE999452.1 Prevotella conceptionensis 9403948, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 13165 47 93.6 29 ..C...G.................................A...... GGTATATTGTACGTGAATGGGGCGTTTAT 13089 47 100.0 29 ............................................... CGCAATATTCATTTGAACAAAAATAAAGG 13013 47 100.0 30 ............................................... TGTGCTACTTGTTTCTGCCACATTTCGCGC 12936 47 100.0 30 ............................................... TTATTTGAACGATTGGTTTGGTCCAGGCTC 12859 47 100.0 30 ............................................... AAAAGCAACTTAAACAAATTATGGCACTGC 12782 47 100.0 30 ............................................... ATAAACAATAATTGAGTAGGATGATTCCTA 12705 47 100.0 29 ............................................... AGTAAGTTCTGTGCCGTTATAATCAACGG 12629 47 100.0 30 ............................................... CGGTCAATGATTTTTGCATATTCAATTTGG 12552 47 100.0 29 ............................................... TATGTGGTCGTGCATGCACAAATCAACAG 12476 47 100.0 30 ............................................... GTCCGCGGTCATGGTAACATACATTTCTTG 12399 47 100.0 30 ............................................... TATACTCAGAATAACGAGGCTGCCAACCGA 12322 47 100.0 30 ............................................... GTCAGGATAGAAATAAACTAACTGTTGTCC 12245 47 100.0 29 ............................................... TAGGATTTTATTTGCTATCTTTGCACACA 12169 47 100.0 30 ............................................... TCGCACGATACGGACACTTCAACGTTTAGC 12092 47 100.0 30 ............................................... TACTGATGCCAAAGATGTGAATAAGGAATA 12015 47 100.0 29 ............................................... AATATTATATACAATATTATAGTTTGAGT 11939 47 100.0 30 ............................................... AAAATTGCGCCTACCTGCGTGCTATTTGCG 11862 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 18 47 99.6 30 GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Left flank : GGTTGGCGGACGCTGTGAAACAGAGTCGAGTGGCGGAATTACTTTCGAAACAATGATTCCCTATGCACAGGCCGGCGTGGACTTCATCTCTTTTGGGGCACTTACACACAGTGTTAAGGGGCTAGACATGAGCTTTAAGGCTGCGGGTAAGTAGCCGCACACCACTCTTCTACCTACGTTTTTATCGCTATAAACAATAGGTGGCCATCATTAGAAGAACATGGCTGCTGGGTTATTTGGTGCCGTGAGGTAAACTAAGTGAGTGGATGTCGTGACGTTATGCTGTATCGCAAACAACCTAACAGCTAATGGTTTCCTTTCACAAAGCGGAAAGGAGCGTGTCACACTTGTACGACTGAAAGAATAAGTTGCTAACGTATGGGGTAAAACAAAACGTTAGACTTATTCAGCCTAACGTTATCGGAGGTTCCGAAGACGGCAAGCCGGCTCTCCGATACCATTGCAAAGATACAACTTTATTCGTTACCACCAAACTTTTA # Right flank : GGCGTTAGCAGATAGTGAATTTGAGTTGCTGTTGTGATTTGCTTGAAAAGTAAGCATCCAATATTCGCCGTCTTTTTCCGATATGTTTTGTTTCCTACCTTTGTGCAAAAAAATATGTTTGCACTCAACGAAACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.57%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTGAAAACTCGTACATTTGCAGTATCGCCAACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //