Array 1 18475-16003 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQO01000020.1 Deinococcus knuensis strain JCM 31406 sequence20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================= ================== 18474 29 100.0 32 ............................. CGGCGCATTTTTTCGTGTACCAGTTGCGCGAC 18413 29 100.0 32 ............................. CCTGAAGCGCAACTCACGAACGTTGTCAGTCT 18352 29 100.0 32 ............................. AGCAACTATCACGTTGCCCTGAACGCCTACAT 18291 29 100.0 32 ............................. CAACCGGGTTGCGGTCAGGGGTGGGCGGGAAG 18230 29 100.0 32 ............................. GTGCGGGCGAGCATGGCGGGGTCGGTGAGTTC 18169 29 100.0 32 ............................. AGCGAACTTGCCGACCTGATCGAGAAGAGCGG 18108 29 100.0 32 ............................. CAGGGGGCACGAAAACCAACAGTCCGTCTAGT 18047 29 100.0 32 ............................. ACGCACAGCCCTTGGGGTCACGGGGGCCGCGT 17986 29 100.0 32 ............................. GCGCACGAGGACGCCAATATCATCAGCCACCC 17925 29 100.0 32 ............................. CGCCTCGTCGGCATGAGCTAATCGGGCCTGCC 17864 29 100.0 32 ............................. TCGGCGGCGATCTGGGCGCGTTCGGCTTTGCT 17803 29 100.0 32 ............................. TCCACGTCGTTCATCTGGTCGAGGTGCACGGT 17742 29 100.0 32 ............................. GCGCCCTTCGCCCTCGTCAATGACCTTCTGGA 17681 29 100.0 32 ............................. TGCATGGTCCCGAGACTGAGGTACTGTTCGTC 17620 29 100.0 32 ............................. TCCGCTCTGTCTCAGTCCACTGCGGGTATCAA 17559 29 100.0 32 ............................. ACGCGATGAGTCACGCCGTTGTTGTCGGGAAT 17498 29 100.0 32 ............................. GGTGCGTCTCGGGGTTCATTGCGGGGTGTGCG 17437 29 100.0 32 ............................. TCTGGCCTGGACGCGCCGTCTGACGCTCACGG 17376 29 100.0 32 ............................. GCGACGTTGACACTCGACAGGTCCGGCACCTG 17315 29 100.0 32 ............................. TCGAATGCAGCGCGCCGTGAGTTGCGCGCCAT 17254 29 100.0 32 ............................. GGAAACCCGCGCGGCTGGTCGAATTGTGCGCG 17193 29 100.0 32 ............................. GTTCTCCAACATAATCTCTCTGATCGTCAACG 17132 29 100.0 32 ............................. CGGGCAGCGAACTGGGCCTTCAGGGTGGCCCA 17071 29 100.0 32 ............................. TGTTCCCGTTCGGCGCTGTGCTGTCTGCTGCT 17010 29 100.0 32 ............................. GTCAACCTCGATGGGGGGCGTTCGTTCTCGGT 16949 29 100.0 32 ............................. ACATTGAGGGTCGCCACGCCCGCTTGATCAAC 16888 29 100.0 32 ............................. CTTCTCTATGGCGTACTGGGCGCTACAAGTTG 16827 29 100.0 32 ............................. ATATTACCCATTAGACAGCCTCCAGACGAGCA 16766 29 100.0 32 ............................. TCCGGCGCGGCATTCCACATGTATCTGGAGCG 16705 29 100.0 32 ............................. TCCGGCGCGGCATTCCACATGTATCTGGAGCG 16644 29 100.0 32 ............................. TCCTGAATGCCGCGGTCCTCGCGGGCCTGGGC 16583 29 100.0 32 ............................. CTCATGTCCCTCACGCTACGCGAGGAACGTAA 16522 29 100.0 32 ............................. GGACGCAGAGTGATGTGCGGGGCACAGAGCCC 16461 29 100.0 32 ............................. CGACTGTTCGCTGACGCTGAGACTGGAAAGCG 16400 29 100.0 32 ............................. AATCCGAGGATTCCATTTTGCTGCGCGGTCGC 16339 29 100.0 32 ............................. AGGCTGTAACCGAAATCCCCGGTGCGGCTGAC 16278 29 100.0 32 ............................. GTCTTGTCTTCGAAGGTCATGTCGCTCTCGGG 16217 29 100.0 157 ............................. CCAGCTAAGTACGTCGAAGCTAACATTGCGAGATTCCGGGAAAGCGCCGGAATCTCTCCATTCCCGCTTCAACGTACTTCCTCTGCTACGCGCTCCGCGCGGTTTATCTCAAAGATAAACGCAGTGTACTTAGCAGCGGATTTGTCGGTTGCCCCGT 16031 29 86.2 0 ....G........TC..T........... | ========== ====== ====== ====== ============================= ============================================================================================================================================================= ================== 39 29 99.6 35 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : CCACCACCTCCTCGGCGGCGACCAGCATGACCCCGAACCCACCGCCCCCGGCGACCTCTGGGACCCCGAAGGCGACGTCCAGGGCGGCATCAACCACGCATGATCGTCATGACCCTCGAAGCCGTCCCACCCAGCCTGCGCGGCGAACTCAGCCGCTGGCTGATTGAAGTCCAACCCGGCGTGTACGTCGGCAACACCACCGCCCTCGTCCGCGACCTCCTCTGGGACAAGGTCGTCCAGTACGCGCGCACCGGCCGCTGCACCCAGCTGTACCGCGCAAATAACGAACAGGGCTTCGCCATCCGCCTGCACGGCGACCCCCGCCGCACCCTCGTCACTCTTGACGGCTTCCAACTGGTTGCCGTTCGCAACGCCCGTCATGCAGAATTGCAGGGGGAATACGACCCTCCCGAGGACGATGACAAACTGTAAGCCGAATCCGACCCCAGCGAAGAGACTTCCAGGGGGCACATACCCGTTGCACCTCGTGTTTCTGAAGT # Right flank : CACCTTCAGGGCGGCCCGATCTCTCTCGCCGTCAGGCGGGCGTGGGTCGCCGTGCGGCGTCCCCGAAGGCCAGGTCCGCGTTGATCGCGGCGGCTGCGCGCGCGCCGCTGGCGGCGGCCAGGACGACCTGCTGCTCGCCGATCATGTCCCCGGCGGCGTACACGCCCGGTACGCTGGTCAGTCCGCTTTCCGGCGTGACCTGCAGCAGGACGCCCGCCAGGGGGCCGCGCTCGATGCGGGCGCAGCCGAGTTGCTCGGGAATCGCAGAGCGTTGCGCCTGTCCGGGCATCACGAACAGCGCGTCGCGTTCCATTGACGGGCCGCTGTCGAAGGTGACCTTCCGGCCGTCCCAGCTGGTGACGGACCGCTCGTCGATGCGGACGCCCAGGTGCGCGAGGTTCGCGCGTTGGTCGGCGCTGAGGTGGTCGGGGCCGTGCGTGAGGAGCGTCAGGTGCGGCGTCCACTGCTGCAGGAGGACGCCGCGGTGGTAGGCCATGTCG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 31035-33564 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMQO01000020.1 Deinococcus knuensis strain JCM 31406 sequence20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31035 29 100.0 32 ............................. GTCACGCCCGCGCGACACGACCAGTACGAAAT 31096 29 100.0 32 ............................. ACGCTGACGAACGCGGCGGCCATGGTGGCGGA 31157 29 100.0 32 ............................. CCTGAGGAGGTCGGCGCTGAGGCGCTCGCCCT 31218 29 100.0 32 ............................. CCCACGTGGTCGCCCTGACCCTCGCGGACACC 31279 29 100.0 32 ............................. CCGTGCGTGTGCATCAGGCCCCACATGGCCGC 31340 29 100.0 32 ............................. GATGCCGGAACAGCACCGGCAGCCCGTCAAGG 31401 29 100.0 32 ............................. TACCCGCAGCTGAGCAGCGCCATCCAGGTCAT 31462 29 100.0 32 ............................. TGCTCCAGTTCCGCCACTTCTACGCCAAGTAC 31523 29 96.6 32 ............................T ACCGGACGTTCCAGGGATAATTGCGTCGTCTA 31584 29 100.0 32 ............................. TGCGGGTCGAGGTTCAGGTTCCGCCACACCTG 31645 29 100.0 32 ............................. CCGTGCGTGTGCATCAGGCCCCACATGGCCGC 31706 29 100.0 32 ............................. GCCAGCCGGGAGAACATCATTGCCGCGCTCAC 31767 29 100.0 32 ............................. GGGCGGCCCGCCCTGCGCGGGTGAATCGGCGT 31828 29 100.0 32 ............................. ACGCACGATCTGCTGAACGTGGCCGTGACGGG 31889 29 100.0 32 ............................. CCGCAGATGTGGGCGACATGCTAGCAAAAGCG 31950 29 100.0 32 ............................. CCCAGCACAGCAAACCGGAATGAGGCGGCGCG 32011 29 100.0 32 ............................. GCCCACGCCTACGCGCTGGCCGTGTACAAGGA 32072 29 100.0 32 ............................. CGCGGCGCGGTCGCGGTAAATCCTATGGGATG 32133 29 100.0 32 ............................. GGCTTGGGTTGTCAAGGGCGAAGGGCGCGTAG 32194 29 100.0 32 ............................. CACGATTGACCGCACCCGGCTCATGGCCTCAG 32255 29 100.0 32 ............................. GCCGGTGGACCTATTCGCGCAGCCAGCCGGAA 32316 29 100.0 32 ............................. GCGGGGTGTTGTTAAAATACTGTGCTATTGCG 32377 29 100.0 32 ............................. TACCGCCTGGGCGACGTTGAAGAGACGTACCG 32438 29 100.0 32 ............................. ACGGCTGGTCGGGGATTATTCAATGCCGCATG 32499 29 100.0 32 ............................. ACGATCAACATGCCCGCCGGGAGTACCCGTCA 32560 29 100.0 32 ............................. CCGCGCGTGAATCATCGGCCTGCACAATGTGG 32621 29 100.0 32 ............................. ACGGGCGGCATTTACCGTGTCAGGCGAGAGGA 32682 29 100.0 32 ............................. AGCGTGCTTGACGACCTCCCGGAGCTGAAGGG 32743 29 100.0 32 ............................. GCCACCATCGCCGCCCGGAACGCCGCCCGTGA 32804 29 100.0 32 ............................. AGGTGGTGTTCATCGCCTCCCGCATCTCGTAC 32865 29 100.0 32 ............................. CCCCCACGCAGAACAGCGACGGAACCTACAGC 32926 29 100.0 32 ............................. GCTGGAAGGCGGGGGTTTTTTCGTTTCGCTGG 32987 29 100.0 32 ............................. CCCTCCACCTTGGCGGGAATGGGGGCGGTGCG 33048 29 100.0 32 ............................. CCGACCGCCTCGCCCAGCTGCACTCCATCCAG 33109 29 100.0 32 ............................. TTGCGGACGTACTTGCGGATGTCGGTGGCGTT 33170 29 100.0 32 ............................. ATGTACGTCAGGCACTGCGAGAGATTCGTGCC 33231 29 100.0 32 ............................. TACAGTTAGGCGGGCGTGTTGTTCAGGGCCGT 33292 29 96.6 32 ..T.......................... AATCGCCGCTGTGGGTCTACGCCCCACCGCAC 33353 29 96.6 32 ..T.......................... AGCGGCAACGTCTCCCGCACCTGCACCAACTC 33414 29 96.6 32 ..T.......................... CGAACGTGTACGGGGTGGAACTGTGAGGTGGT 33475 29 93.1 32 ..T.....................A.... CGCGGCAGCACGACGCCACGACCGGCCGCGTA 33536 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.5 32 GAGTTCCCCACGCCTGTGGGGATGGCCCG # Left flank : CACGAACGCCGCGACGGACGACCTTGCCGCAGAGACGCCCCACTTCGGCACCCGCCTGGGCGACGACAGCCTCCGCATCGTCCCCATTCACCGGAACGGCGCTGACTATCTCGACCAGAAAGGCCAGACCGCCGCGCAGATCACCACCCTCCAGAAAAACGACTGGGACACCGCCCGCGCCATCTACCGCCGCAGCCTCCAGGTGTCCCGGCACGACCTCGTCCGGCACTACCGCGACCACCCCACCCGCCGCGGCACAGATCACACCGGTTGGGCCGCCCACCCACTCCTGCGAGACGCCGAACCCCTCATCCTGACCGGCAATCAGACGGTCATCGGTAGGACCCGCGTGGCCCTCGACCCCGAACTCGGCCTTACCTACGAACGCATAGAATGACCGCAGGCACCCGCCCGCGCCGCATGAAAATGTAAGCTGAAACCGAGGGGGGAGAGGAGACCTCCCGCCCCCCTTACTCCCCCGGAGTGCGTGTTCCTGAAGT # Right flank : GGTCGGTTGGGATGGTGGCGCGCGGTATTGTGGGCGGCACATGATCACGGCGACGATCTTCACGCGGGTGGGGCGGGGAAAACGTCCATCACCCGCGACGTGGGGTACCAGTTCGCGCAGGCGGGCCTGCGGGTGCTGCTGGTGGACCTGGACCCGCAGGCGAACCTGAGCAGTTGGCTGGGCGTGCGGAACGTCAGCATCGACGCGACGGTGTACGACCTCGCCACGACCGGCGCGCCCCTGCCGGAGCCAGTCGAGGCGCATGGACTGCACGTCATTCCCAGTCAGGTGGACCTGGCGCTGGCCGAGACGGGCATGCTCGGCGTGCCGGGTTCGCAGCTGTTCCTGCGGCAGGCGCTCGAGCAGGTGCGTGACCGGTACGACGTGGTCCTGATCGACAGTCCACCCAGCGTCGGGCAACTCGCGATCCTGGGCGCCGTCGCCGCCGACCGCCTGATCGTCCCCGTCCCCACCCGGCAGAAAGGCCTCGACGCCCTGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCACGCCTGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //