Array 1 115124-109851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPXU010000005.1 Bifidobacterium adolescentis strain MSK.8.32 NODE_5_length_189699_cov_414.826, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 115123 33 100.0 33 ................................. TCCGCATCCCTTTCCTCCACGGCATCGGCGAGC 115057 33 100.0 36 ................................. CAGTTTGATGCATCGTTGAACGGAAGTTCGACGCGG 114988 33 100.0 35 ................................. CTTGTCTTATTCGGTTTCCAGGGCGTTCAACGTGA 114920 33 100.0 35 ................................. TACATCCTCGTCCGCGGCGCCACGCTCGCCTACAG 114852 33 100.0 34 ................................. AGTGTACATATCCAGCTGGATATAATCAAACCAA 114785 33 100.0 33 ................................. GTCTTCCGGCCTGATGTGCTCGTCTCGTGGAAG 114719 33 100.0 35 ................................. GGATGCACATGCCAGTTTGTAATCGGCATCATCGG 114651 33 100.0 34 ................................. GTTTTCGGCTTTGATGTCGAAAACGCCATCCTTG 114584 33 100.0 34 ................................. CAGTTGAAGCTTTACAACGCCGACCAGCCTTGCC 114517 33 100.0 34 ................................. TGAGTGTCCGTCAGATTATCGGTCAGACCCTCGA 114450 33 100.0 34 ................................. CTGTCACTTGGCTGATGCGTTCCAGATCTCCGAT 114383 33 100.0 34 ................................. TCAAGACGTTGCTCGACGAAAACAAGGCGCGTGG 114316 33 100.0 34 ................................. TCTCTTTACGTCGAACGGGGGATGCAGCCGATTC 114249 33 100.0 36 ................................. AACGCCGTCTGATTGTCGGCCAAATCCTTTTGAAGT 114180 33 100.0 33 ................................. TTCGATGGGGGAGTACCCCAAGTGGACGTGACC 114114 33 100.0 36 ................................. AAGTACGGCGGGCCCTTGCCTGCGCTCCGCCAGTTG 114045 33 100.0 38 ................................. TGTGAGAGGGTGCGTCCGGTCTTCAACCGGCGCAGCGC 113974 33 100.0 34 ................................. AATGTAAAGGAGACTAAATAATGGCTGGAGAAAC 113907 33 100.0 33 ................................. TAAGTCTTCGGCGGAGTGATCCGCCACAGGGCT 113841 33 100.0 34 ................................. AAGACCAGTTGGAAGTGCCGGTACGGACTTGGCA 113774 33 100.0 33 ................................. ACCTTGATGGCGTAGCCGTTCGTGCCATCCCTG 113708 33 100.0 35 ................................. CAACAGCGAGAAAAAATCATCGAAGACCTCATCGC 113640 33 100.0 33 ................................. GACGAGAAGGCCGGCGACCGCTACGAGCTGGTC 113574 33 100.0 34 ................................. ATGGCGAAGCGGTCGTATAGGAATTTGCGGTCAC 113507 33 100.0 35 ................................. AGGCATTCGAGGATTTGCGCCGTCTGTGCCGCATC 113439 33 100.0 35 ................................. CATGAGACTGCGCAGGAGGTTTTCAGCGCGGATGG 113371 33 100.0 35 ................................. TGATTCTGAAACTTCGGCGGATTGAATGTAATCCG 113303 33 100.0 35 ................................. ATGTCCGCAAACTGCATGGTTTGTTGGTTGCTCAA 113235 33 100.0 32 ................................. TGGACTGGCGAAGGCTCCAACGAGTCCGTGAC 113170 33 100.0 35 ................................. GGACAGGGGCCGTTCTCGGCGGGTCCGAGCACCCT 113102 33 100.0 35 ................................. ACTGCTTGCGGACTTTTACACCTACTGGCAGGGAA 113034 33 100.0 33 ................................. GCCTTTACCGGCGTGCGTGCTTTGAAAGCGTCG 112968 33 100.0 36 ................................. TGGAACATCCAATTCGACAAAGTGGAAGCATCGGAG 112899 33 100.0 33 ................................. GACTTGGCCTTGGAATCGTCAACGTCAAGCTTC 112833 33 100.0 33 ................................. ACGAGCGGCAACGGCCTGACGTTCTACGGCGAC 112767 33 100.0 34 ................................. CGAATCAAGGAAACCGCCATCACCCATTCGGACG 112700 33 100.0 34 ................................. ACGTCAATCATCACAACACCTCGATTTCGTCATT 112633 33 100.0 35 ................................. ATCATCGACGACCAGATGGCCGACGACAGGCGCAT 112565 33 100.0 34 ................................. CTCAATATCTGCAATGGCTGCTACGTGCGAATCA 112498 33 100.0 34 ................................. AAGCGCAAGATGGACGCCGATGCGTGGGGAGCGG 112431 33 100.0 33 ................................. TTGATCGGCACCTGATTGTCACCGGGCTTGCGG 112365 33 100.0 34 ................................. AAAACGGCGAAAATCGAATACTCGCAATTCTCCG 112298 33 100.0 34 ................................. GCTTTGTTCGTCACGGGTTTCGCGGTGCCGGTGA 112231 33 100.0 34 ................................. CTGTTCCTGTCCATCCTGAATTTCGTGGCGGGAA 112164 33 100.0 33 ................................. ACGTCGTAGGCGCTCACGGTGGCGGTGTCGTTC 112098 33 100.0 35 ................................. CATGTCTTTCCCTCCATGCTTTGCCTTAGAATGGT 112030 33 100.0 33 ................................. CTCGGTCAACGGCGTTTCGGGCGTGCGCACAAG 111964 33 100.0 34 ................................. TACTTGCCGGGCGGACTTTGCTCGGCTATTGCAG 111897 33 100.0 33 ................................. GTATTTAAGGAGACATTTTGACTCAGCAGATTC 111831 33 100.0 33 ................................. ATCGGCTATCGACCATAAGTCATCGTCGTACAT 111765 33 100.0 35 ................................. ATGCTGCCGCCTCCTGTTCGAACAATTGTTCGGCC 111697 33 100.0 33 ................................. GTCCTGACGTTGAACGACTCGCGTGCGGAACTC 111631 33 100.0 34 ................................. GCTCAGAACGGCACCATCGGCGCCGAGGCCGGAG 111564 33 100.0 33 ................................. TCCATAGCTAGTAGAGGACCTCAAACTCTGCCG 111498 33 100.0 35 ................................. TTCTGCGCGCGCTCCAGACGGGCATAGTCACGCAG 111430 33 100.0 34 ................................. ATAGCCCTTGGAATCCAACGAACGGAACTCTCTC 111363 33 100.0 32 ................................. AATCAGTGAAGCTTTGAAACCCTGCGAATCAT 111298 33 100.0 34 ................................. GTTGACGAATGGGGGGACTTGAAGCAGAAGGCGA 111231 33 100.0 34 ................................. ATCGACGAGAACGGGAAATTGGACAATGTGTCGG 111164 33 100.0 35 ................................. AGCATGGCCGCCAGGTCCGCGCCGAATTCGGCGGC 111096 33 100.0 34 ................................. GCGAGCTGGGCGGTGAACAAGAACGCCTCCGAAA 111029 33 100.0 34 ................................. CAGTTGACACACTCAGTGCAACGAACGTCTACAG 110962 33 100.0 35 ................................. AACGCGTTGGCGGGCGACTGATGATATGCCGTCAC 110894 33 100.0 34 ................................. GCCACGAGATCGAACGGCGCGAAGCGGGTGCCGT 110827 33 100.0 37 ................................. AACAGACGACACTTGGGATAACGTGACACCAGTAAAC 110757 33 100.0 33 ................................. GCGTTCGTGGGGAACCGCGTGTAGTTTCCTTCC 110691 33 97.0 34 ................................G GTTAACGTATACTACGAAGGAAAAGCTTCCGCAC 110624 33 100.0 34 ................................. TCTGTGTCGCGTGATTTTCAGCCGACTGTCAGTA 110557 33 100.0 36 ................................. ATGGCGCACCCTCACGACCAATAGAAAAACCTTCGG 110488 33 100.0 34 ................................. CTGACGACGTGCGGCAGACGGTCCGCGTTCACGG 110421 33 97.0 33 ........T........................ GTTATCGGACATGGAAACCTCCATCGGATTATC 110355 33 100.0 35 ................................. CAACCGGTCGGCATCGAGTACAAGGTCGAGGGCGC 110287 33 100.0 35 ................................. GACTGGGAGGGCCGGTGGCTGCGGCTGAACAAGGA 110219 33 100.0 34 ................................. GCGGATGACGCCAACAATATCCAGCCGGACGTGA 110152 33 100.0 33 ................................. TCGTACACCGTCTTCGTTGACTGCGCCGCCAAT 110086 33 100.0 35 ................................. ATCGGGAATGCGTTTCAACGCCGCGGAAAGCTGGG 110018 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 109950 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 109883 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 79 33 99.9 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : CCAATATTGATGAGGACAGTCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCGTTATGGGCATGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGGTAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCCGGGTTGAGTGTTTGAGCGTGACGTCCGGCATCTGGAGCGTGTTCTCTAGCCGGCGGTATTGTGGTTTCGGCAAGGTGGCCGGTCTTGAAATAGTGTTTGTGCGAAGTGGAAGCGCTCATGATGAGGGGCGCCTTTCGCACCTGAAAAACTGTCGAAATCCGAATTGTGATTTTCGTGGGCGTTTGAAAACTAAATAGTGGACATTAAAATGAGACAGAAAGACAGCTGCTCGTTTTAGGCATGTTGTTCGTCGTACCGGTGGTGTTGTTTGATATGCTTAAAGCCAAGCAGCTGGCTTGCGTCTCAGAAAGTGGACAAAAATGTCCAGCTGCACA # Right flank : CGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCGGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCGCCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCTTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTTGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGACCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAGCCCTTCTTGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGTGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //