Array 1 9804-7257 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDCK01000005.1 Listeria monocytogenes strain ICDC_LM0250 LM0250Scaffold4_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9803 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 9737 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 9671 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 9605 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 9539 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 9473 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 9407 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 9341 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 9275 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 9209 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 9143 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 9077 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 9011 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 8945 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 8879 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 8813 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 8747 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 8681 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 8615 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 8549 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 8483 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 8417 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 8351 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 8285 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 8219 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 8153 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 8087 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 8021 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 7955 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 7889 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 7823 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 7757 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 7691 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 7625 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 7559 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 7493 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 7427 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 7361 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 7295 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [7260,7263,7268] ========== ====== ====== ====== ==================================== ============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //