Array 1 31-364 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGBG01000101.1 Ectothiorhodospira sp. PHS-1 contig101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31 29 100.0 32 ............................. GTGAGGTATCAACGCCTTCCAGTCACTATTCC 92 29 100.0 32 ............................. CGTCCACTTTAATGTAAACCTGGCTGGTTTCC 153 29 96.6 32 ............................A GAATATCAACGGAAACACTCCTGCCAAAAATC 214 29 100.0 32 ............................. AGCATCGGTAATCCCGAAAAAATAACCGGCAA 275 29 100.0 32 ............................. TGGCTGGCCTTTTGGGTCATAGCACAGACAGC 336 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GCGTTCCCCGCAGGTGCGGGGATGAACCG # Left flank : TGCGATCCTTGCGTCAATGCTTGTTCTTGTG # Right flank : GATTGTGATTAACAAAACACGGACGCCAAACGGCGTTCCCCGCAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 398-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGBG01000102.1 Ectothiorhodospira sp. PHS-1 contig102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 397 29 100.0 32 ............................. TCGGCAACAGCTTTGGCGTCATGTCCGATGTC 336 29 100.0 32 ............................. TGCGCACGGTCAGGTTTACAGGTGCGAGGCCC 275 29 100.0 32 ............................. GTCGTCAATGTGATTCTCCGAGTAGAGTTGAC 214 29 100.0 32 ............................. GCAGGACCGTCGCCAGCAAGCACGGCGGCGTG 153 29 100.0 32 ............................. CAATGAATTTTGGGCCGGCCAAGTGGTGAGGC 92 29 100.0 32 ............................. AACCATACCAGCATGCACAGAGCATGCCATGT 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GCGTTCCCCGCAGGTGCGGGGATGAACCG # Left flank : GGCGCCCTCG # Right flank : GCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 407-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGBG01000098.1 Ectothiorhodospira sp. PHS-1 contig098, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 406 29 100.0 32 ............................. TACCTGCCGCTGGCGTCGTAACGGCAGAGGAA 345 29 100.0 32 ............................. GATACAGAGAATCTGATATAGCTCGGGAATCA 284 29 100.0 32 ............................. GCGGACCTCGGGGGCGTCCTCGCCGGCCATCA 223 29 100.0 32 ............................. TTTATCGTCCTTCTCGAACCGAAACTATTACT 162 29 96.6 33 ............................T GCTCCACGCTACGTTTAGCAGGCGCCTTCTCCC 100 29 96.6 32 ............................T CGATGGTGTTGAGTGTGGCGGTGGCTTCGCTG 39 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 GCGTTCCCCGCAGGTGCGGGGATGAACCG # Left flank : ACGGCGTTCCAGACCTCGCGCTGCAGCTG # Right flank : GGCGTTCGATG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 520-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGBG01000093.1 Ectothiorhodospira sp. PHS-1 contig093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 519 29 100.0 31 ............................. TTTTTTGTGACATTGATGGTATTAACCTGCC 459 29 100.0 32 ............................. CAACAACCAAAAAACCAAAACAAAACCAACGA 398 29 96.6 32 ............................A ACCGATTGGCGGGGAAGTTCGCGGGGAAGCCC 337 29 100.0 32 ............................. GTGATGACCTTGCAGGCCGGGAGTGTCGTGTC 276 29 100.0 32 ............................. AATACGATCCGTCGCTAACTCGGTCTCAGGGC 215 29 100.0 32 ............................. TTTGCGCAGATTGAAGCGGCCGATAGTACGGT 154 29 100.0 32 ............................. CAAATGGTGATTGAAATGGTAAAAATCGAGAT 93 29 100.0 32 ............................. GCTTGTCAACATCCATTTGCCCATCACGTTGA 32 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GCGTTCCCCGCAGGTGCGGGGATGAACCG # Left flank : GCCCTCAGTAGAATATTCAGAT # Right flank : GGCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-501 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGBG01000025.1 Ectothiorhodospira sp. PHS-1 contig025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 33 ............................. TGGTTCGGGCTGCACATCACCCGGGTGCCTGGT C [6] 64 29 100.0 32 ............................. AACCACACAAACGACTCATCCGTTACAAGCGT 125 29 100.0 32 ............................. CCGTCATGCCCGGCAGCGTCACCGCGCAGTGG 186 29 100.0 32 ............................. ATCAGCTTAAATCTGATCTTCTTGGCGTCAAT 247 29 100.0 32 ............................. TCCTCAAAGCCCCGGAAGGCGCTGACAAACAG 308 29 100.0 32 ............................. CTGGTGACGCTTCAGGGTGGTCCACTCGATCT 369 29 100.0 32 ............................. CCAGTGATGCCCGCATGGTCGCCGGTGATGTG 430 29 100.0 12 ............................. GGCCTACCCGCG Deletion [472] 471 29 75.9 0 .T...T..AAG....CA............ | AG [483] ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.3 30 GCGTTCCCCGCAGGTGCGGGGATGAACCG # Left flank : | # Right flank : GCTCGCTCTGAAGACGTTTTACTTAAACTCCGGCGACTGATGCCGATCCGTCCCCGGGCCCTACGTCCACAACGATTCGTGGTATGACCACAACGGCTCGATGTAACCGGATCGACTGCTAGGGAGTATAGCTTTGATCGAAGTGCAGATCGATGGCGCCGAACCGACCGCCGCGCTGGAGCGCCTGGCCCAGGGCACCGGTAATTCCCAGCTTGTCCTGGATGAGGCGGGCGAACTCCTGTGCACACCACTCGGCGCCACTTTATCGACAAGCAGGCGCCGGACGGCAGCCCTTGGCCCGCCGCAACTACTCACGCCCCCTGCCTATCACTGTGTTTGGCGCACGCAAGAAGCGCAGAGTACTGCTGACGTTGGAAACGATTTCTATTGGCAGGAAAAAGCAGGAGTGACTTGGCCGCCCCATGCCCGGCCAAGTCGCCACAGGCGTATAGCCGAAGGAAATGACCTGACGGCACCCCTGCCGCAACGTCCGCAACGTT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 470-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGBG01000021.1 Ectothiorhodospira sp. PHS-1 contig021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 469 29 100.0 32 ............................. GTGATTTAAATGATTAAAGTGGAAATTGATTC 408 29 100.0 32 ............................. TTGATCCTGATATTTTTGTTCCCGCTCATTCC 347 29 100.0 32 ............................. GTCGCGCGCCCTGCTTGCGATTGATGCGTAAG 286 29 100.0 32 ............................. CGCATGTGCTCGTGAGTCAGCTCCGCATCGTC 225 29 100.0 32 ............................. TTCGTTGGCAGTGAAAAGTGTATTTCCTGCGT 164 29 100.0 33 ............................. GCCCTTTCGGCCTGCCAGCTTGCCCGCCGTGGA 102 29 100.0 32 ............................. ATAACCGGATGGGCAGTACCACACGTTATCGT 41 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 100.0 32 GCGTTCCCCGCAGGTGCGGGGATGAACCG # Left flank : GGCGCCGGCCATTCCTCTTGCGGAGCCTTTGGGTGATGCTGGTCATCGTGGTTGAAAATGTGCCGCCGCGCTTGCGTGGGCGTCTGGCTATCTGGCTATTGGAAACGCGAGCCGGGGTTTACGTTGGGAAGGTCAGTCGCCGGATTCGTGAGATGATCTGGGAGCAGGTGGTAGCCGGTATAGAGGATGGCAATGCCGTGATGGCTTGGTCCACCAATACGGAGGCTGGCTTTGATTTTCAGACCTGCGGCAAAAACAGACGCCTTCCATTGGACCATGACGGGATGAAACTCGTGTCTTTTTTTCCCGATCCAGTGGGGGATGAAGCAGGAAACTGATGCGCATGTGTTGGTACAAATCCTGATTGCTTCTGTTTGGTATGTATAACTATTTGATTTTTAATGCTCTTTAAAAACTTGGGAAGTGTCGTGAAAGGAATAAGTGTTGGTAGAGTTTTTTGTGCTTTAAAAATTTAAATTTTTCATGGAGTTAGAGGAAGT # Right flank : GTTCATCGGAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCAGGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //