Array 1 647343-649065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVX010000005.1 Nocardia nova strain LGO-A14 A14_AS2_SC05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================ ================== 647343 37 97.3 35 ....................................G TACGGCGAGGCCGCGTACTGCTTCCGAGACCTCGA 647415 37 97.3 35 ....................................G TACGGCGAGGCCGCGTACTGCTTCCGAGACCTCGA 647487 37 97.3 33 ....................................G AGATCGACCAGCCGCACCGGTCCCGGATCACGC 647557 37 100.0 36 ..................................... CTGGATCCGGGCGTACGGGGCGCTGCTGGCACCACT 647630 37 100.0 36 ..................................... TTGGAGCGGGAATTGGGGCAGTTCAGCGAGCAGACT 647703 37 100.0 36 ..................................... GCGGTCATCGAGCGCACGGGCAGCGGCCAGCAGCGG 647776 37 100.0 35 ..................................... TTTGATCGCGTCGGCCGCGGTATCCGAGTCGCGGG 647848 37 100.0 33 ..................................... GGTGGGCAAGCCGCGGGCGCGAACATGCCCGAC 647918 37 100.0 33 ..................................... GGTGGGCAAGCCGCGGGCGCGAACATGCCCGAC 647988 37 100.0 35 ..................................... GTAATCGTGCTGAGTAGGTCGGCCTGCAGCTGCGC 648060 37 100.0 36 ..................................... ATCATCGGCTCGCAGATCCCCGACGACGGCAACGGC 648133 37 97.3 37 ............T........................ TTCTGGGACGACGCGCTGGCTGAATGGATTCCCGATG 648207 37 100.0 35 ..................................... CAGCTCGGTCGGGATCTGATCGCCGGGGTGCAGCT 648279 37 100.0 34 ..................................... TCCGGCGTGGCCAACGGATTCGGTGCCGCTACCC 648350 37 97.3 35 ..............G...................... TTCGCCCTCGAGATCGCGATGTGGGATACCCGCGG 648422 37 97.3 38 ..........C.......................... ACCGGCTACATCAGCGGCTGGCATGGCTACGGCCCCGG 648497 37 100.0 34 ..................................... CGCTACTTCGGCGCCAACACCGCGAATCCTGCTG 648568 37 100.0 35 ..................................... GCCGAATTGCGCGGTAATACGCACGATTTCGGCCA 648640 37 100.0 35 ..................................... GCCTGCGGTGATTCGCTTGCCGAGCCACGGAGCCG 648712 37 94.6 36 ..............C.......T.............. AGCAGCACGCCTCGATTGCCGCGCAGCCCGACCAGA 648785 36 97.3 36 ...........-......................... AGGATCGACGATAAGTACCCCGGCGGGTTGACTGGC A [648801] 648858 37 86.5 37 .......G.....TC.............A....T... GAAGTGTGGGAAAGAGGCCGTCTCACCGGCGGCCACG 648932 37 89.2 60 ..T.........TTC...................... AAGGACTGGAAGACCAAGTGGGCCAGGGAAACCGGATTCCTCACCCAGACGCGGCGCGCG 649029 37 75.7 0 ...TA..T..G..GC.A.......G...........T | ========== ====== ====== ====== ===================================== ============================================================ ================== 24 37 97.0 36 CTGGCGCCGGACCCTCGGGTCCGGCGAGGATCTCAAC # Left flank : GTGCGGGGCGGTCTCGTCTTGATGCGCAGCAATGCCGACTGGTCTGATTGTGAGATCGGTTGGGGCCAAAGCGATTAGGGCTCGCCCAGCTTGGCGGAGTCGCGTGCCCGGCCGTAGGCTGTGGTTCGTCACTTACAGCAAATGAACATTTCGGTGAAAGGCGTGGCCATGGGAGAGGCGAACACCCGCGTCGGGTCGCGGCAATGGAGGCGTGTGATCTGGACTTACGTGTCCGCGGTCGTTCGCAAACTGGCCGTGGCAGTTCCGGTTGCCATCGCGGTCCACTTCCTGGAGTGGAGGTGATCGCATGACACATCTGTTCATTGGTAGTAGGCCGGTGTTTTGGCTTGACTGCAGGAGGTACAGGTCGGTTCGGAACCTGTATTGCGACCAAAATTCCAGGACCGTTCCGAAGTGGCGACCTGGCCCAATGCCGGATTGTTGAAGCGATATGCTCGTCTGTTGCGATGGTTGCACATTAAAGGCGCAGGTCATCCAGC # Right flank : TCGGGTGAACTCCGCGAGGCGTCCTCGGGCCTCACTGACGTCGGACCTCTGGGGCGGTGAGATCCCTTAAGACTGACGTGAACGGTGATCGTTGCAGGTGATCGTGTAGGCGACGTCTGGTGGTTGTGGGCGATAGGACTTGTCGGTGGTCGGGTGCATCATGTTGTGCAAGGGGATTTCCTGTCGCTGGCGTGGTGCAGGGGGTTGCTGGTTCTGGGGTTGTTTCGTCCGAGCAAGGGAGGTGCCGGCTGTGTCGGTGGTGGTGGAGGTCAGGGGGGCGGGGGCGTTGTTCACCCAGCCTGGGCTGAGTGCGGAGCGGGTGACCTATCCGGTGATGACGCCGTCGGCCGCAGTGGGGGTGTTGTCGGCGATCTATTGGAAGCCCGAGATCGCTTATCGGATCGAGAAGATCGAGGTCTTGAACCCGATCCGGACGTTCACGTTGCGCCGGAACGAGACTACGGATCTGGCGTCTTTGACCGACGCGGCGAAGGGGGCGC # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGGCGCCGGACCCTCGGGTCCGGCGAGGATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.20,-17.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 654942-656933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUVX010000005.1 Nocardia nova strain LGO-A14 A14_AS2_SC05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 654942 37 100.0 35 ..................................... ATGATCTGCGACAACCGCCCGTGCAGGGCGTAGAT 655014 37 100.0 35 ..................................... ATCAACGAGGGCAGTGCTGGGCACGACGCCAGCCG 655086 37 100.0 36 ..................................... CTATGCTGCCGGTTGAATTTCCGGAAGTTGTTGTGC 655159 37 100.0 34 ..................................... CGGATCCCAGCTGTAGCGGGCGGCGATGGCTTCG 655230 37 100.0 36 ..................................... TAGCGGTGCAGCGATGACGTCGAAATGCAGTAGCGA 655303 37 100.0 39 ..................................... CCATGACCGACGAGGAGAAGGCGGCCGCGCGGGCCACCG 655379 37 100.0 37 ..................................... GTTCGGGTCGATGCTCATTTCGGGTCACCTTTCGGGG 655453 37 100.0 34 ..................................... TTCGGCAAGCTCGCCGACGGTGCGTTCGCCACCG 655524 37 100.0 36 ..................................... AGCCAGCGTTCGCAGTCCTTGCGGGTCATGCCGAGT 655597 37 100.0 34 ..................................... AGGTCGTGGCCCAGCTTCGTCCAGGCGTGCAGCG 655668 37 100.0 36 ..................................... CGCCGCCGCCGCATTGAGGGATTTGCCCGAATCGAC 655741 37 100.0 35 ..................................... TTCGATCTCGTCGTCGTCCCATTCGGAGTACTCGG 655813 37 100.0 35 ..................................... ACCGCCCGACTCGCGCCCGGCGCGCGGGAAGTGAT 655885 37 100.0 34 ..................................... GAGGACGTCACCGATGGCCAGCTCGACCGTGAAG 655956 37 100.0 35 ..................................... ACGAATTCGACTGCGCCGGAGTAGAAGGCGCCGAG 656028 37 100.0 36 ..................................... GGACAGATCCGGTCGGTTGACGTCGTCGTCGGGGAA 656101 37 100.0 33 ..................................... CAGATGCAGCAGGAGCTTGCCAAGGCGGTCAAG 656171 37 100.0 34 ..................................... CTGGATGAAGGAACACCGGACTCGGGCGCGGAGA 656242 37 100.0 35 ..................................... ACCGAGTACGGGTTGGTTACACCCATGATCGGCAT 656314 37 100.0 38 ..................................... TTTCGGTCTCTCGCTTCGGGTATCGCTGCTCGGCGGCG 656389 37 100.0 34 ..................................... TGCAGCGCCCAGTCCGCGGCGACCATCGTCGGGA 656460 37 97.3 35 ...........................A......... ATCCGGTCGAGGTATTCGAAGAAACCGCGGGGCGG 656532 37 100.0 36 ..................................... GCGTGGGGTGATGCCGAGGCGATCGAGCCAGGTCAA 656605 37 97.3 38 ......................C.............. ATCCTCGGGCTGTGGGTCGCCGCGGAGGGCGCGGTCTA 656680 37 100.0 34 ..................................... GTCGGCGTCGGCCTGCCGCTGGTGTGGCTCGGTG 656751 37 100.0 37 ..................................... TGCGCCTTGCGATTCCACGCCCAGCCACCGCCGGCGA 656825 37 97.3 35 .................T................... ACCATCCAGACCGGCATCGACGGATTCCGTAAGAA 656897 37 91.9 0 ...........G.................G....G.. | ========== ====== ====== ====== ===================================== ======================================= ================== 28 37 99.4 35 GTGGCGCCGGGCCGCAAGGCTCGGCGAGGATCTCAAC # Left flank : GGTGCAAGCGCGCATCCTGGCACGGCACCTTCGAGGCGATATCCCCACCTACGTCCCGTGGACGGTGGCCTGATGGAACTGCTCATCACCTATGACGTCGAGACGATGAGTCCGGAAGGGGCGCAGAGGCTTCGGCGCGTAGCCAAGATCTGCGAAGGCTACGGACATCGTGTTCAGAAGTCTGTATTCGAAGTTACCTGCACCCCGACCACGAGACTTCGGCTCGAATCAGCCCTAGCCGCCACCATCGACCGAAGCCGAGACAGCATCCGCATCTACCAACTCGACCGCGGAACCTTCGACACCGCACGTCACCTCGGCGCAGCGGTCAACCCGCCTCACTCGGGGCCCTTAATCCTCTGATCGCCAGCCTCGGAACCCCAATTGCAACCACAATTCCAGGAGGGTTCCGAAGTGGCCACCAGCATAAACACGGTTACAGAAAGCGCCCATACCGCGCTAATCAAAAGGCTGATGACCAAAACCGCAGGTCATTCAGC # Right flank : CATTCCGACCGCGATCGCGCGCACGATGGTCTGCTGTGGGATCCCTTGACGCGCTGTATCGCATGGGTATAGCCGGGCCTCGCCGTGCGCCCGCTGCTGATCGCTCAGGGGTAGGGCAGGTAGCGTCGCCGTTTTGGCACTCTGCTTGTCATCGTGCGATCTTGAGGAGGACGTTGGTCTGTTGCTGGGCGATAGCTTCTCCTTCGGATCCGTCGGCCCAGGTTATTTCGGCGTCTGCTTCTAATTGGTTGGCCTGTTGTATCTGTCGGTCGGCAAATTGTGGTTCGTTGGGTTTGCTGGGACCGTGCAGCATGCTGGGGTTATCTCGTGTCGGCTGGCTTTGGGTTCAGACACGCCGAACGGCTCCGCAATGTCGATTACAGCGCATGTCCGGGCAGTGTCCAGAGTGCCACCCGCCATGCCGACCCACGCACCGCCATGCACTACGCAGACCCGCACCAGCCTCGATCGGCACTCGACTACATGCTCGCCGCCTGCCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCGGGCCGCAAGGCTCGGCGAGGATCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.50,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //