Array 1 783722-781513 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051449.1 Salmonella enterica subsp. enterica serovar Reading strain CVM 21978 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 783721 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 783660 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 783599 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 783538 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 783477 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 783416 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 783355 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 783294 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 783233 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 783172 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 783111 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 783050 29 100.0 32 ............................. GCCCCTTATTACTCCGAAAATCCCAAAGATCA 782989 29 100.0 32 ............................. AAAAATCGGCTAACGAGGAAACGGCCTATAAC 782928 29 100.0 33 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTGC 782866 29 100.0 32 ............................. CCGTCGGTGTTGATTTTCAGCTCTTTAGCTTT 782805 29 100.0 32 ............................. GAAATATTTGCATGGATAGTTGCGCTTTATAT 782744 29 100.0 33 ............................. CCGTATCTGCTCTATCAGCTCGGCTCGGCGCGC 782682 29 100.0 32 ............................. CGTCAGAAAAACGGTTTATGCCGCCAGCCTGA 782621 29 100.0 32 ............................. TGATATCCCTCTGGTGATAGGCGTTGAGGTAG 782560 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 782499 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 782438 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 782377 29 100.0 33 ............................. ATTTAAACCACATTGAAACGGCTATTTACTGGC 782315 29 100.0 73 ............................. CATTAAAAAAAACATTTGCTATAGGTGGCGGGGATAAACCGTGGTTGTTAATGCTGGCGATATTTTTAGCACA 782213 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 782152 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 782091 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 782030 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 781969 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 781908 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 781847 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 781786 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 781725 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 781664 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 781603 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 781542 29 96.6 0 ............T................ | A [781515] ========== ====== ====== ====== ============================= ========================================================================= ================== 36 29 99.9 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 801720-799983 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051449.1 Salmonella enterica subsp. enterica serovar Reading strain CVM 21978 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 801719 29 100.0 32 ............................. GCGTGCAGCGTGTTTTAAAGGGGGTTTAATAG 801658 29 100.0 32 ............................. CCATCGCAGAAAACAAACCGGGTTTTATTGCG 801597 29 100.0 32 ............................. CCCGCCCGCACAGGGAGGCGGTAACAGCTCAA 801536 29 100.0 32 ............................. GAAACCGCCCGATTCAAAAAAACGGCCTTCTT 801475 29 100.0 32 ............................. GGCACGCTCAAACAAATTTTTGTTGGTTTCTC 801414 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 801353 29 100.0 32 ............................. GCCAGCCCAACACCAGCAATAGCAGCAGCTAC 801292 29 100.0 32 ............................. ATGAGGCCGCGATGCGCGGCTGGTCAGGTGAG 801231 29 100.0 32 ............................. TAGGTTTCTTCCTGAAGGCGAAGCATTTTCTT 801170 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 801109 29 100.0 32 ............................. CGGCGGGCTCGCTATCAGCCTTGCGGCGTTCC 801048 29 100.0 32 ............................. TTATTATAAGCGCACTCAGGCCGGAAAAGTTA 800987 29 100.0 32 ............................. GCTATTTAGCACCTTGCGGTGTTCTGCTATGC 800926 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 800865 29 100.0 32 ............................. AATTCCTCGATAGCGATCTGCACCAGGTTGAA 800804 29 100.0 32 ............................. TCTCAATGGGAAAAATCAAGTCAGATGCTTCA 800743 29 100.0 32 ............................. CGACGGTGGCTGAGTTAAAACAGGCCTGGAAA 800682 29 100.0 32 ............................. ATCGACGCTGGTCTGGTGTGGCGCGACGGACG 800621 29 100.0 32 ............................. AACGCTTTTATTTTTTATGACCCCCCAATTTG 800560 29 100.0 32 ............................. ACCGAGGTCGATCTGCTGTCTGACGTGCAGCA 800499 29 100.0 33 ............................. CACCCCATCATCTTCCGCAATCCACATTCCAGC 800437 29 100.0 32 ............................. ATTGAACCCGCCTACGCGCGGGTATTTTTTTC 800376 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 800315 29 100.0 32 ............................. ATCCTGATTTGTAGTAAGTCTGGTCGGAGGAA 800254 29 100.0 32 ............................. CGTTCGAACGCTACACCCTGGCAAGGGCAACT 800193 29 100.0 32 ............................. TCGCCCTTTCGTTTCGTGGGAATGTTCAACGC 800132 29 100.0 32 ............................. GTCTGCATCGCGTACAATGCGCCCGCATCGCC 800071 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 800010 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCAATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //