Array 1 21825-20800 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAIMFM010000003.1 Streptococcus agalactiae strain G1-9 G1-9_Scaffold3, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     21824	    36	 100.0	    30	....................................	GATGGCTCTCGGGAAACAAACTGATGAATA	
     21758	    36	 100.0	    30	....................................	AATGATTGGAACTAGCAACGGTTGGTTAGT	
     21692	    36	 100.0	    30	....................................	ATCACCGTATGAAATCCATTCACCGTGATG	
     21626	    36	 100.0	    30	....................................	TGTCAATTTTCGTGTAAAGGAGGTAACTTT	
     21560	    36	 100.0	    30	....................................	AAAACGATTATGTTTGTGCTATGTGCGGCG	
     21494	    36	 100.0	    30	....................................	AACAAAATTGAATATAGGGATTTAAATGGT	
     21428	    36	 100.0	    30	....................................	CTTTCCATCCATACGAACCCCAGTTATAGT	
     21362	    36	 100.0	    30	....................................	TAAAAAATACCAACTATCAAAAGTGATAGT	
     21296	    36	 100.0	    30	....................................	CGTAGTAGTTATTCCAATTCTCTATATGTA	
     21230	    36	 100.0	    30	....................................	AAACCACTTGATGCTGTATCTCTCATAAAA	
     21164	    36	 100.0	    30	....................................	ATTGTGATACAGATAGTTTATACCTAAAAA	
     21098	    36	 100.0	    30	....................................	TGGTTTAATACTGTAAATTGTTCAATATCA	
     21032	    36	 100.0	    29	....................................	CCCTCAATTTATTGACATTATTAATATAA 	
     20967	    36	 100.0	    30	....................................	AAAAAGAGCCAGAAACTCAATCAGAAGAAA	
     20901	    36	 100.0	    30	....................................	TGGTGTTGGCTGTTCTGGGATGACTACGTT	
     20835	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  TTTAATATCGTCTATATAGATTCCTGGACGGTTTTAGAGCTGCGCGGTTATTATGCTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTAGCAAGCTAACGAAATCATCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATATAGAGTTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATATGAAAGACTATAATTCCAACCTTATTGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGATGGATCTCACCTATTAA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-0.20,-4.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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